RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CHRNDQ07001 517 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 ADALQ6DHV7 355 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 MICU3Q86XE3 530 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 UBXN4Q92575 508 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 CDCA7Q9BWT1 371 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 RASSF4Q9H2L5 321 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 ANO10Q9NW15 660 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 ZSWIM5Q9P217 1185 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 TAOK2Q9UL54 1235 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 IQSEC3Q9UPP2 1182 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 THRAP3Q9Y2W1 955 aaKnown RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 SPATA31A5Q5VU36 1347 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 SPATA31A7Q8IWB4 1347 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 NUTM2BA6NNL0 878 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 NUTM2EB1AL46 878 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 NRDCO43847 1150 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 KCNJ6P48051 423 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 MAP3K12Q12852 859 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 CCDC152Q4G0S7 254 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 PARP10Q53GL7 1025 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 SYT10Q6XYQ8 523 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 ADGRA1Q86SQ6 560 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 NUTM2AQ8IVF1 878 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 MRPS27Q92552 414 aaKnown RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 PPP1R13BQ96KQ4 1090 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 NAT10Q9H0A0 1025 aaKnown RBP14.07□□□□□ -0.16
SHMT2-207ENST00000553837 POLR3EQ9NVU0 708 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 TAF1P21675 1872 aa14.07□□□□□ -0.16
SHMT2-207ENST00000553837 SMIM22K7EJ46 135 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 POLR3GO15318 223 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-207ENST00000553837 KINO60870 393 aaKnown RBP14.06□□□□□ -0.16
SHMT2-207ENST00000553837 STK38Q15208 465 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 CCDC150Q8NCX0 1101 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 ALG1Q9BT22 464 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 SRRTQ9BXP5 876 aaKnown RBP14.06□□□□□ -0.16
SHMT2-207ENST00000553837 CWC15Q9P013 229 aaKnown RBP14.06□□□□□ -0.16
SHMT2-207ENST00000553837 A0A1W2PQ27 194 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 A0A1W2PQ64 194 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 A0A1W2PQD8 194 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 CCP110O43303 1012 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 E4F1Q66K89 784 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-207ENST00000553837 KRBA2Q6ZNG9 492 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 SGMS1Q86VZ5 419 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 DHX40Q8IX18 779 aaKnown RBP14.06□□□□□ -0.16
SHMT2-207ENST00000553837 STK11IPQ8N1F8 1099 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 MIGA1Q8NAN2 632 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 NAPBQ9H115 298 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 RTL9Q8NET4 1388 aa14.06□□□□□ -0.16
SHMT2-207ENST00000553837 SPTLC2O15270 562 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 WDHD1O75717 1129 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-207ENST00000553837 YEATS4O95619 227 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 IGHMBP2P38935 993 aaKnown RBP14.05□□□□□ -0.16
SHMT2-207ENST00000553837 LAMB2P55268 1798 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 TMEM67Q5HYA8 995 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 ANO1Q5XXA6 986 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 KRT40Q6A162 431 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 BCORQ6W2J9 1755 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 PTF1AQ7RTS3 328 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 BRAPQ7Z569 592 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 FBXW7Q969H0 707 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 TMEM87BQ96K49 555 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 BRMS1Q9HCU9 246 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 CHD4Q14839 1912 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 TIAM2Q8IVF5 1701 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 CICQ96RK0 1608 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-207ENST00000553837 COL1A1P02452 1464 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-207ENST00000553837 MROH7-TTC4A0A0A0MT08 1334 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 ZBTB43O43298 467 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 ERFEQ4G0M1 354 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 CEP57L1Q8IYX8 460 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 LINC00116Q8NCU8 138 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 NEK11Q8NG66 645 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 MYCBPQ99417 103 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-207ENST00000553837 ZKSCAN3Q9BRR0 538 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 UBXN6Q9BZV1 441 aa14.05□□□□□ -0.16
SHMT2-207ENST00000553837 AKNAD1Q5T1N1 836 aa14.04□□□□□ -0.16
SHMT2-207ENST00000553837 NFXL1Q6ZNB6 911 aa14.04□□□□□ -0.16
SHMT2-207ENST00000553837 VPS37DQ86XT2 251 aa14.04□□□□□ -0.16
SHMT2-207ENST00000553837 KCNG4Q8TDN1 519 aa14.04□□□□□ -0.16
SHMT2-207ENST00000553837 SLC4A4Q9Y6R1 1079 aa14.04□□□□□ -0.16
SHMT2-207ENST00000553837 PHLPP2Q6ZVD8 1323 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 COL5A3P25940 1745 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-207ENST00000553837 GOLGA8AA7E2F4 631 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 IFIT3O14879 490 aaKnown RBP14.03□□□□□ -0.16
SHMT2-207ENST00000553837 MARCKSP29966 332 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-207ENST00000553837 GUCY1A2P33402 732 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 GYG1P46976 350 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 PIP4K2BP78356 416 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 SF3A1Q15459 793 aaKnown RBP14.03□□□□□ -0.16
SHMT2-207ENST00000553837 LRRN4CLQ8ND94 238 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 MNS1Q8NEH6 495 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 RSPH14Q9UHP6 348 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 PNPLA7Q6ZV29 1317 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 EFCAB8A8MWE9 144 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 LIFRP42702 1097 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 ETF1P62495 437 aaKnown RBP14.03□□□□□ -0.16
SHMT2-207ENST00000553837 ZSCAN26Q16670 478 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 RRP12Q5JTH9 1297 aaKnown RBP14.03□□□□□ -0.16
SHMT2-207ENST00000553837 HOMER1Q86YM7 354 aa14.03□□□□□ -0.16
SHMT2-207ENST00000553837 SFPQP23246 707 aaKnown RBP eCLIP14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms