RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.27□□□□□ -0.61
SYNE2-209ENST00000553308 COPRSQ9NQ92 184 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 ZMYND8Q9ULU4 1186 aaPredicted RBP11.27□□□□□ -0.61
SYNE2-209ENST00000553308 PLXNB2O15031 1838 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 A0A1B0GUL7 405 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 TBC1D12O60347 775 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 MNX1P50219 401 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-209ENST00000553308 SLFN5Q08AF3 891 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 RRP1BQ14684 758 aaKnown RBP11.26□□□□□ -0.61
SYNE2-209ENST00000553308 SPTY2D1Q68D10 685 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-209ENST00000553308 PI16Q6UXB8 463 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 ERICH6Q7L0X2 663 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 ZNF280CQ8ND82 737 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 XAGE2Q96GT9 111 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 MEIS3Q99687 375 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 OSBPL5Q9H0X9 879 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-209ENST00000553308 ASCC2Q9H1I8 757 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-209ENST00000553308 GJD2Q9UKL4 321 aa11.26□□□□□ -0.61
SYNE2-209ENST00000553308 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.26□□□□□ -0.61
SYNE2-209ENST00000553308 COL2A1P02458 1487 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-209ENST00000553308 NPM3O75607 178 aaKnown RBP11.25□□□□□ -0.61
SYNE2-209ENST00000553308 SYN1P17600 705 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 BMP8BP34820 402 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 GCLCP48506 637 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-209ENST00000553308 TFCP2Q12800 502 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 ANKLE1Q8NAG6 615 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 TRIB2Q92519 343 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 CDCA7LQ96GN5 454 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 HMX1Q9NP08 348 aaPredicted RBP11.25□□□□□ -0.61
SYNE2-209ENST00000553308 RPTORQ8N122 1335 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 SIPA1L1O43166 1804 aa11.25□□□□□ -0.61
SYNE2-209ENST00000553308 PEX10O60683 326 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 CAP2P40123 477 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 MVPQ14764 893 aaKnown RBP11.24□□□□□ -0.61
SYNE2-209ENST00000553308 TBC1D9Q6ZT07 1266 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 Q7L0L9 218 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 NSUN4Q96CB9 384 aaKnown RBP11.24□□□□□ -0.61
SYNE2-209ENST00000553308 NBPF3Q9H094 633 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 C11orf49Q9H6J7 331 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 HMG20BQ9P0W2 317 aa11.24□□□□□ -0.61
SYNE2-209ENST00000553308 NOB1Q9ULX3 412 aaKnown RBP11.24□□□□□ -0.61
SYNE2-209ENST00000553308 USP17L5A8MUK1 530 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 CYP2B6P20813 491 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 MAGEA10P43363 369 aaPredicted RBP11.23□□□□□ -0.61
SYNE2-209ENST00000553308 PABPC4Q13310 644 aaKnown RBP eCLIP11.23□□□□□ -0.61
SYNE2-209ENST00000553308 MTMR2Q13614 643 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 SH3D19Q5HYK7 790 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 NEUROD6Q96NK8 337 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 TBC1D2Q9BYX2 928 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 MORF4L1Q9UBU8 362 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 AKAP2Q9Y2D5 859 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 PFASO15067 1338 aa11.23□□□□□ -0.61
SYNE2-209ENST00000553308 SRGAP3O43295 1099 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 LDHCP07864 332 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 PRKAR2AP13861 404 aaKnown RBP11.22□□□□□ -0.61
SYNE2-209ENST00000553308 IRX3P78415 501 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-209ENST00000553308 GSTO1P78417 241 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 SHROOM1Q2M3G4 852 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-209ENST00000553308 MAP3K21Q5TCX8 1036 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 TEX11Q8IYF3 940 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 DEFB123Q8N688 67 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 SPATA5Q8NB90 893 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 SH3RF3Q8TEJ3 882 aaPredicted RBP11.22□□□□□ -0.61
SYNE2-209ENST00000553308 API5Q9BZZ5 524 aaKnown RBP11.22□□□□□ -0.61
SYNE2-209ENST00000553308 AS3MTQ9HBK9 375 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 TXNRD2Q9NNW7 524 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 RAI14Q9P0K7 980 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 OGDHLQ9ULD0 1010 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 HDAC5Q9UQL6 1122 aa11.22□□□□□ -0.61
SYNE2-209ENST00000553308 MAST2Q6P0Q8 1798 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 MAP4K4O95819 1239 aaPredicted RBP11.21□□□□□ -0.61
SYNE2-209ENST00000553308 ARID4AP29374 1257 aaPredicted RBP11.21□□□□□ -0.61
SYNE2-209ENST00000553308 MCAMP43121 646 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 JAG1P78504 1218 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 LRIT3Q3SXY7 679 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 GPR153Q6NV75 609 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 TDHQ8IZJ6 230 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 P2RX7Q99572 595 aaKnown RBP11.21□□□□□ -0.61
SYNE2-209ENST00000553308 WDR18Q9BV38 432 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 DNAJC18Q9H819 358 aa11.21□□□□□ -0.61
SYNE2-209ENST00000553308 HERC5Q9UII4 1024 aaKnown RBP11.21□□□□□ -0.61
SYNE2-209ENST00000553308 ZNF316A6NFI3 1004 aaPredicted RBP11.2□□□□□ -0.62
SYNE2-209ENST00000553308 BACE1P56817 501 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 HERVK_113P62684 666 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 MTX1Q13505 466 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 GORABQ5T7V8 394 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 TRMT2AQ8IZ69 625 aaKnown RBP11.2□□□□□ -0.62
SYNE2-209ENST00000553308 SOCS4Q8WXH5 440 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 NUDT12Q9BQG2 462 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 UBE2OQ9C0C9 1292 aaKnown RBP11.2□□□□□ -0.62
SYNE2-209ENST00000553308 TMOD4Q9NZQ9 345 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 PI4KBQ9UBF8 816 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 CDK5RAP2Q96SN8 1893 aa11.2□□□□□ -0.62
SYNE2-209ENST00000553308 FLT1P17948 1338 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 GDF11O95390 407 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 ASNSP08243 561 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 COL6A1P12109 1028 aa11.19□□□□□ -0.62
SYNE2-209ENST00000553308 XRCC5P13010 732 aaKnown RBP11.19□□□□□ -0.62
SYNE2-209ENST00000553308 ZKSCAN1P17029 563 aaPredicted RBP11.19□□□□□ -0.62
SYNE2-209ENST00000553308 CCND3P30281 292 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms