RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ASPAP45381 313 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 PRKCQQ04759 706 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 MEX3CQ5U5Q3 659 aaKnown RBP5.82□□□□□ -1.48
LIMA1-206ENST00000550611 LILRA6Q6PI73 481 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 SIAH1Q8IUQ4 282 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 PI4K2BQ8TCG2 481 aa5.82□□□□□ -1.48
LIMA1-206ENST00000550611 ABCA6Q8N139 1617 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 LRRC10BA6NIK2 292 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 PRRG2O14669 202 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 HNRNPMP52272 730 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIMA1-206ENST00000550611 DNM1Q05193 864 aaKnown RBP5.81□□□□□ -1.48
LIMA1-206ENST00000550611 C8orf34Q49A92 452 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 AKAP4Q5JQC9 854 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 ZNF772Q68DY9 489 aaPredicted RBP5.81□□□□□ -1.48
LIMA1-206ENST00000550611 PLD6Q8N2A8 252 aaKnown RBP5.81□□□□□ -1.48
LIMA1-206ENST00000550611 FLAD1Q8NFF5 587 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 CLP1Q92989 425 aaKnown RBP5.81□□□□□ -1.48
LIMA1-206ENST00000550611 MKNK2Q9HBH9 465 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 AP4E1Q9UPM8 1137 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 FAM135BQ49AJ0 1406 aa5.81□□□□□ -1.48
LIMA1-206ENST00000550611 DNMT1P26358 1616 aaKnown RBP5.81□□□□□ -1.48
LIMA1-206ENST00000550611 SPAG9O60271 1321 aaKnown RBP5.8□□□□□ -1.48
LIMA1-206ENST00000550611 ABCC1P33527 1531 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 A6NHS1 94 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 PHACTR2O75167 634 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 TNFRSF21O75509 655 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 TSPAN15O95858 294 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 CTSBP07858 339 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 CFPP27918 469 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 RAP1GAPP47736 663 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 PCDH1Q08174 1060 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 POU4F3Q15319 338 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 PEAR1Q5VY43 1037 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-206ENST00000550611 C1QL4Q86Z23 238 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 ZSCAN18Q8TBC5 510 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-206ENST00000550611 SNX29Q8TEQ0 813 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 KRTAP17-1Q9BYP8 105 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 CLEC4MQ9H2X3 399 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-206ENST00000550611 RAD18Q9NS91 495 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIMA1-206ENST00000550611 DAGLAQ9Y4D2 1042 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 MYO3AQ8NEV4 1616 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 NPHP4O75161 1426 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-206ENST00000550611 CASKIN1Q8WXD9 1431 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 KIAA1107Q9UPP5 1409 aa5.8□□□□□ -1.48
LIMA1-206ENST00000550611 MYO5CQ9NQX4 1742 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 LRP6O75581 1613 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 ZNF423Q2M1K9 1284 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 NOM1Q5C9Z4 860 aaKnown RBP5.79□□□□□ -1.48
LIMA1-206ENST00000550611 THEMISQ8N1K5 641 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-206ENST00000550611 PPP1R16BQ96T49 567 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 SEPT3Q9UH03 358 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 RAPGEFL1Q9UHV5 662 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 KIDINS220Q9ULH0 1771 aa5.79□□□□□ -1.48
LIMA1-206ENST00000550611 GPATCH8Q9UKJ3 1502 aaKnown RBP5.79□□□□□ -1.48
LIMA1-206ENST00000550611 CLTCQ00610 1675 aaKnown RBP5.79□□□□□ -1.48
LIMA1-206ENST00000550611 A2ML1A8K2U0 1454 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 IFI16Q16666 785 aaKnown RBP5.78□□□□□ -1.48
LIMA1-206ENST00000550611 SLC23A3Q6PIS1 610 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 LCNL1Q6ZST4 164 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 ZSWIM9Q86XI8 627 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 SAMD9LQ8IVG5 1584 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 FAM181AQ8N9Y4 354 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 HELQQ8TDG4 1101 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 KRTAP9-3Q9BYQ3 159 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 ZNF777Q9ULD5 760 aaPredicted RBP5.78□□□□□ -1.48
LIMA1-206ENST00000550611 CDC42BPBQ9Y5S2 1711 aa5.78□□□□□ -1.48
LIMA1-206ENST00000550611 A2MP01023 1474 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 ZNF503-AS2A6NEH8 195 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 METTL12A8MUP2 240 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 B8ZZF3 427 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 FAM87AP0C7U9 286 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 YY1P25490 414 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 TMEM164Q5U3C3 297 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 LRRC56Q8IYG6 542 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-206ENST00000550611 DDX54Q8TDD1 881 aaKnown RBP5.77□□□□□ -1.49
LIMA1-206ENST00000550611 TRIM56Q9BRZ2 755 aaKnown RBP5.77□□□□□ -1.49
LIMA1-206ENST00000550611 LATS2Q9NRM7 1088 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 CFDP1Q9UEE9 299 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-206ENST00000550611 ZNF142P52746 1687 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-206ENST00000550611 JCADQ9P266 1359 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 CCDC18Q5T9S5 1454 aa5.77□□□□□ -1.49
LIMA1-206ENST00000550611 AFF2P51816 1311 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 EP400Q96L91 3159 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 MROH2AA6NES4 1674 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 TMEM265A0A087WTH1 108 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 A0A096LPE4 126 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 A0A1W2PPZ6 126 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 AOC2O75106 756 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 ATG7O95352 703 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 LTKP29376 864 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 CD96P40200 585 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 EIF1AXP47813 144 aaKnown RBP5.76□□□□□ -1.49
LIMA1-206ENST00000550611 SRPK2P78362 688 aaKnown RBP5.76□□□□□ -1.49
LIMA1-206ENST00000550611 EHHADHQ08426 723 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 AOC3Q16853 763 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 ANGEL2Q5VTE6 544 aaKnown RBP5.76□□□□□ -1.49
LIMA1-206ENST00000550611 CCNJLQ8IV13 435 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 HRASLS5Q96KN8 279 aa5.76□□□□□ -1.49
LIMA1-206ENST00000550611 CORO1BQ9BR76 489 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms