RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-213	ENST00000542641	HOOK2	Q96ED9	719 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	PI4KB	Q9UBF8	816 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	ATRNL1	Q5VV63	1379 aa		13.82	□□□□□ -0.2
YBX3-213	ENST00000542641	COL2A1	P02458	1487 aa	Predicted RBP	13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	NF2	P35240	595 aa		13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	PLCD1	P51178	756 aa		13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	TRIM34	Q9BYJ4	488 aa		13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	ZMYM6	O95789	1325 aa		13.81	□□□□□ -0.2
YBX3-213	ENST00000542641	ZNF213	O14771	459 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	EVX2	Q03828	476 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	FMR1	Q06787	632 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	PPARA	Q07869	468 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	IMMT	Q16891	758 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	MIGA2	Q7L4E1	593 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	EHD4	Q9H223	541 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	ZNF408	Q9H9D4	720 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	SERPINB13	Q9UIV8	391 aa		13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	RBM8A	Q9Y5S9	174 aa	Known RBP	13.8	□□□□□ -0.2
YBX3-213	ENST00000542641	SMIM22	K7EJ46	135 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	SEC24B	O95487	1268 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	SLC3A2	P08195	630 aa	Known RBP	13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	FXR2	P51116	673 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	HAND2	P61296	217 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	FSTL1	Q12841	308 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	DCAF15	Q66K64	600 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	STK11IP	Q8N1F8	1099 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	DYNLL2	Q96FJ2	89 aa		13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	4e-26	■■■□□ 16.2
YBX3-213	ENST00000542641	HERC5	Q9UII4	1024 aa	Known RBP	13.79	□□□□□ -0.2
YBX3-213	ENST00000542641	FOCAD	Q5VW36	1801 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	POLR2A	P24928	1970 aa	Known RBP	13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	FAM196B	A6NMK8	535 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	PPP1R12B	O60237	982 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	TBC1D12	O60347	775 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	CELF2	O95319	508 aa	Known RBP	13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	SLURP2	P0DP57	97 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	VASP	P50552	380 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	CTDSPL2	Q05D32	466 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	PRKG1	Q13976	671 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	TTLL12	Q14166	644 aa	Predicted RBP	13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	METTL16	Q86W50	562 aa	Known RBP	13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	USP26	Q9BXU7	913 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	SWAP70	Q9UH65	585 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	ANAPC4	Q9UJX5	808 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	CDK5RAP2	Q96SN8	1893 aa		13.78	□□□□□ -0.2
YBX3-213	ENST00000542641	EPB41L2	O43491	1005 aa	Known RBP	13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	MAP3K10	Q02779	954 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	GABPA	Q06546	454 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	PDE4B	Q07343	736 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	NECTIN1	Q15223	517 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	RNF20	Q5VTR2	975 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	C16orf86	Q6ZW13	317 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	NAV1	Q8NEY1	1877 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	ZNF341	Q9BYN7	854 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	MKNK2	Q9HBH9	465 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	ZNF287	Q9HBT7	754 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	TAOK2	Q9UL54	1235 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	FZD1	Q9UP38	647 aa		13.77	□□□□□ -0.21
YBX3-213	ENST00000542641	PASK	Q96RG2	1323 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	SLC27A2	O14975	620 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	USP2	O75604	605 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	CYP21A2	P08686	494 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	CDK8	P49336	464 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	CST9	Q5W186	159 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	CREB3L3	Q68CJ9	461 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	PIP4P2	Q8N4L2	257 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	C2orf69	Q8N8R5	385 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	SLC44A5	Q8NCS7	719 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	DNAJC18	Q9H819	358 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	ANGEL1	Q9UNK9	670 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	MYH1	P12882	1939 aa		13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	DDX60L	Q5H9U9	1706 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-213	ENST00000542641	SSC5D	A1L4H1	1573 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	ROBO3	Q96MS0	1386 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	PRDM1	O75626	825 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	MCC	P23508	829 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	SHMT1	P34896	483 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	IREB2	P48200	963 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	AKNAD1	Q5T1N1	836 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	TATDN1	Q6P1N9	297 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	MFSD6	Q6ZSS7	791 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	MOB2	Q70IA6	237 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	ARMC9	Q7Z3E5	817 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	STAG1	Q8WVM7	1258 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	WRNIP1	Q96S55	665 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	BACH2	Q9BYV9	841 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	NBPF3	Q9H094	633 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	RNF41	Q9H4P4	317 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	GBA2	Q9HCG7	927 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	INCENP	Q9NQS7	918 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	TOMM22	Q9NS69	142 aa		13.75	□□□□□ -0.21
YBX3-213	ENST00000542641	PHF20L1	A8MW92	1017 aa		13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	PC	P11498	1178 aa	Known RBP	13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	ZKSCAN1	P17029	563 aa	Predicted RBP	13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	HSPA4	P34932	840 aa		13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	FKBP1B	P68106	108 aa		13.74	□□□□□ -0.21
YBX3-213	ENST00000542641	CERKL	Q49MI3	558 aa	Predicted RBP	13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms