RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 PLCD1P51178 756 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 PDE1AP54750 535 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 UBE3CQ15386 1083 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 SHROOM1Q2M3G4 852 aaPredicted RBP11.78□□□□□ -0.52
YBX3-212ENST00000542002 NOL9Q5SY16 702 aaKnown RBP11.78□□□□□ -0.52
YBX3-212ENST00000542002 CCDC84Q86UT8 332 aaPredicted RBP11.78□□□□□ -0.52
YBX3-212ENST00000542002 CHD1LQ86WJ1 897 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 ERO1BQ86YB8 467 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 IFNL1Q8IU54 200 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 REM2Q8IYK8 340 aaPredicted RBP11.78□□□□□ -0.52
YBX3-212ENST00000542002 KBTBD3Q8NAB2 608 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 SDR42E1Q8WUS8 393 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 BRI3BPQ8WY22 251 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 GPATCH3Q96I76 525 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.78□□□□□ -0.524e-26■■■□□ 16.2
YBX3-212ENST00000542002 PI4KBQ9UBF8 816 aa11.78□□□□□ -0.52
YBX3-212ENST00000542002 CA12O43570 354 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 ABCB7O75027 752 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 GLRX3O76003 335 aaKnown RBP11.77□□□□□ -0.53
YBX3-212ENST00000542002 PTPRAP18433 802 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 USP5P45974 858 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 INHBEP58166 350 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 PPATQ06203 517 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 MOGSQ13724 837 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 FOXP4Q8IVH2 680 aaPredicted RBP11.77□□□□□ -0.53
YBX3-212ENST00000542002 PLEKHM2Q8IWE5 1019 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 OSBP2Q969R2 916 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.77□□□□□ -0.53
YBX3-212ENST00000542002 DHX36Q9H2U1 1008 aaKnown RBP11.77□□□□□ -0.53
YBX3-212ENST00000542002 PRDM10Q9NQV6 1147 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 SAGE1Q9NXZ1 904 aa11.77□□□□□ -0.53
YBX3-212ENST00000542002 COL2A1P02458 1487 aaPredicted RBP11.76□□□□□ -0.53
YBX3-212ENST00000542002 RNF113AO15541 343 aaKnown RBP11.76□□□□□ -0.53
YBX3-212ENST00000542002 CTNND1O60716 968 aaKnown RBP11.76□□□□□ -0.53
YBX3-212ENST00000542002 MBD4O95243 580 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 CYP2D6P10635 497 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 KCNA4P22459 653 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 SREBF2Q12772 1141 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 PPIL2Q13356 520 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 SCYL3Q8IZE3 742 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 FAM43AQ8N2R8 423 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 STRBPQ96SI9 672 aaKnown RBP11.76□□□□□ -0.53
YBX3-212ENST00000542002 SEC62Q99442 399 aaKnown RBP11.76□□□□□ -0.53
YBX3-212ENST00000542002 DCP1AQ9NPI6 582 aaPredicted RBP11.76□□□□□ -0.53
YBX3-212ENST00000542002 AFG3L2Q9Y4W6 797 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 ZHX2Q9Y6X8 837 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 DOCK2Q92608 1830 aa11.76□□□□□ -0.53
YBX3-212ENST00000542002 CCL15-CCL14A0A0B4J2E2 113 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 M0R2C6 588 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 ERC2O15083 957 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 PDE4AP27815 886 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 CAP2P40123 477 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 GTF2A2P52657 109 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 CCL15Q16663 113 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 CERS3Q8IU89 383 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 CRNKL1Q9BZJ0 848 aaKnown RBP11.75□□□□□ -0.53
YBX3-212ENST00000542002 HERC5Q9UII4 1024 aaKnown RBP11.75□□□□□ -0.53
YBX3-212ENST00000542002 KCNH4Q9UQ05 1017 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 OTOFQ9HC10 1997 aa11.75□□□□□ -0.53
YBX3-212ENST00000542002 MAST2Q6P0Q8 1798 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 CYP2D7A0A087X1C5 515 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 BTBD19C9JJ37 291 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 SNAPC2Q13487 334 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 ZSCAN25Q6NSZ9 544 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 TATDN1Q6P1N9 297 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 CFHR5Q9BXR6 569 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 PICK1Q9NRD5 415 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 MCM9Q9NXL9 1143 aa11.74□□□□□ -0.53
YBX3-212ENST00000542002 ZBTB47Q9UFB7 747 aaPredicted RBP11.74□□□□□ -0.53
YBX3-212ENST00000542002 GSG1L2A8MUP6 293 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 GDF11O95390 407 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 CETPP11597 493 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 SHMT1P34896 483 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 CAP1Q01518 475 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 GABPAQ06546 454 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 CRHR2Q13324 411 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 DGKZQ13574 1117 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 ZMYM1Q5SVZ6 1142 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 GPAT2Q6NUI2 795 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 APPBP2Q92624 585 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 DYNLL2Q96FJ2 89 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 OSBPL3Q9H4L5 887 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 SLC4A4Q9Y6R1 1079 aa11.73□□□□□ -0.53
YBX3-212ENST00000542002 USP17L12C9JPN9 530 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 USP17L21D6R901 530 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 GPR25O00155 361 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 CXCL11O14625 94 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 FOXP2O15409 715 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 POLR3DP05423 398 aaPredicted RBP11.72□□□□□ -0.53
YBX3-212ENST00000542002 HLA-DOAP06340 250 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 ZFYP08048 801 aaPredicted RBP11.72□□□□□ -0.53
YBX3-212ENST00000542002 SPP2Q13103 211 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 CTR9Q6PD62 1173 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 TTC6Q86TZ1 520 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 CRACR2BQ8N4Y2 399 aaPredicted RBP11.72□□□□□ -0.53
YBX3-212ENST00000542002 SLC44A5Q8NCS7 719 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 ZNF296Q8WUU4 475 aaPredicted RBP11.72□□□□□ -0.53
YBX3-212ENST00000542002 EVI5LQ96CN4 794 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 FSD1Q9BTV5 496 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 EHD4Q9H223 541 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms