RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 CCDC39Q9UFE4 941 aa9.04□□□□□ -0.96
SKP1-213ENST00000524288 PPM1HQ9ULR3 514 aa9.04□□□□□ -0.96
SKP1-213ENST00000524288 SHROOM4Q9ULL8 1493 aa9.03□□□□□ -0.96
SKP1-213ENST00000524288 ARNTP27540 789 aa9.03□□□□□ -0.96
SKP1-213ENST00000524288 CYP27C1Q4G0S4 372 aa9.03□□□□□ -0.96
SKP1-213ENST00000524288 ANKRD24Q8TF21 1146 aa9.03□□□□□ -0.96
SKP1-213ENST00000524288 UBXN4Q92575 508 aa9.03□□□□□ -0.96
SKP1-213ENST00000524288 DHX38Q92620 1227 aaKnown RBP9.03□□□□□ -0.96
SKP1-213ENST00000524288 ZC3H12CQ9C0D7 883 aaKnown RBP9.03□□□□□ -0.96
SKP1-213ENST00000524288 GBP2P32456 591 aaPredicted RBP9.02□□□□□ -0.97
SKP1-213ENST00000524288 KCNB2Q92953 911 aa9.02□□□□□ -0.97
SKP1-213ENST00000524288 DNAJC2Q99543 621 aaKnown RBP9.02□□□□□ -0.97
SKP1-213ENST00000524288 NOC4LQ9BVI4 516 aaKnown RBP9.02□□□□□ -0.97
SKP1-213ENST00000524288 CEP44Q9C0F1 390 aa9.02□□□□□ -0.97
SKP1-213ENST00000524288 TLR6Q9Y2C9 796 aa9.02□□□□□ -0.97
SKP1-213ENST00000524288 SAMM50Q9Y512 469 aa9.02□□□□□ -0.97
SKP1-213ENST00000524288 DYNC1LI2O43237 492 aaPredicted RBP9.01□□□□□ -0.97
SKP1-213ENST00000524288 GTF2F1P35269 517 aaKnown RBP eCLIP9.01□□□□□ -0.97
SKP1-213ENST00000524288 RELL1Q8IUW5 271 aa9.01□□□□□ -0.97
SKP1-213ENST00000524288 SMYD4Q8IYR2 804 aaPredicted RBP9.01□□□□□ -0.97
SKP1-213ENST00000524288 SLC43A3Q8NBI5 491 aa9.01□□□□□ -0.97
SKP1-213ENST00000524288 NECAB3Q96P71 396 aaPredicted RBP9.01□□□□□ -0.97
SKP1-213ENST00000524288 DISC1Q9NRI5 854 aa9.01□□□□□ -0.97
SKP1-213ENST00000524288 KRTAP9-1A8MXZ3 250 aaPredicted RBP9□□□□□ -0.97
SKP1-213ENST00000524288 TAL1P17542 331 aaPredicted RBP9□□□□□ -0.97
SKP1-213ENST00000524288 ARID5AQ03989 594 aa9□□□□□ -0.97
SKP1-213ENST00000524288 FAM160A1Q05DH4 1040 aa9□□□□□ -0.97
SKP1-213ENST00000524288 ZNF252P-AS1Q0IIN9 211 aa9□□□□□ -0.97
SKP1-213ENST00000524288 SCARA3Q6AZY7 606 aa9□□□□□ -0.97
SKP1-213ENST00000524288 SPON2Q9BUD6 331 aa9□□□□□ -0.97
SKP1-213ENST00000524288 ADAMTS1Q9UHI8 967 aa9□□□□□ -0.97
SKP1-213ENST00000524288 ADGRE2Q9UHX3 823 aa9□□□□□ -0.97
SKP1-213ENST00000524288 PAGE1O75459 146 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 ATP2B1P20020 1258 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 ERVK-24P63145 666 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 RSRP1Q9BUV0 290 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 LRRC4CQ9HCJ2 640 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 CACNA2D2Q9NY47 1150 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 ZC3H7BQ9UGR2 993 aaKnown RBP8.99□□□□□ -0.97
SKP1-213ENST00000524288 PCOLCE2Q9UKZ9 415 aa8.99□□□□□ -0.97
SKP1-213ENST00000524288 ENC1O14682 589 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 LIG3P49916 1009 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 TTLL4Q14679 1199 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 ZC3H12AQ5D1E8 599 aaKnown RBP8.98□□□□□ -0.97
SKP1-213ENST00000524288 SV2BQ7L1I2 683 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 KIAA0825Q8IV33 1275 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 ABI1Q8IZP0 508 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 AGBL5Q8NDL9 886 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 STK35Q8TDR2 534 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 GPRASP2Q96D09 838 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 TMEM74Q96NL1 305 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 FMNL2Q96PY5 1086 aa8.98□□□□□ -0.97
SKP1-213ENST00000524288 KRTAP9-6A0A140TA67 174 aa8.97□□□□□ -0.97
SKP1-213ENST00000524288 EIF4A3P38919 411 aaKnown RBP8.97□□□□□ -0.97
SKP1-213ENST00000524288 MAP1SQ66K74 1059 aaPredicted RBP8.97□□□□□ -0.97
SKP1-213ENST00000524288 STK11IPQ8N1F8 1099 aa8.97□□□□□ -0.97
SKP1-213ENST00000524288 RNF214Q8ND24 703 aa8.97□□□□□ -0.97
SKP1-213ENST00000524288 MISP3Q96FF7 219 aa8.97□□□□□ -0.97
SKP1-213ENST00000524288 TRIM37O94972 964 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 PF4P02776 101 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 TXKP42681 527 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 GJA8P48165 433 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 PWP1Q13610 501 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 TTBK2Q6IQ55 1244 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 NFXL1Q6ZNB6 911 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 MCF2L2Q86YR7 1114 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 TP53INP2Q8IXH6 220 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 PHC3Q8NDX5 983 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 GPBAR1Q8TDU6 330 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 ACSBG1Q96GR2 724 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 LGR6Q9HBX8 967 aa8.96□□□□□ -0.98
SKP1-213ENST00000524288 RNGTTO60942 597 aaKnown RBP8.95□□□□□ -0.98
SKP1-213ENST00000524288 FAM87AP0C7U9 286 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 HCLS1P14317 486 aaPredicted RBP8.95□□□□□ -0.98
SKP1-213ENST00000524288 CDK5R2Q13319 367 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 LRRC14Q15048 493 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 FBXL19Q6PCT2 694 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 VPS37DQ86XT2 251 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 FLCNQ8NFG4 579 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 ZNF296Q8WUU4 475 aaPredicted RBP8.95□□□□□ -0.98
SKP1-213ENST00000524288 EAF1Q96JC9 268 aaPredicted RBP8.95□□□□□ -0.98
SKP1-213ENST00000524288 RHOVQ96L33 236 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 KRTAP4-12Q9BQ66 201 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.95□□□□□ -0.98
SKP1-213ENST00000524288 MKNK2Q9HBH9 465 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 CBX8Q9HC52 389 aa8.95□□□□□ -0.98
SKP1-213ENST00000524288 BMP6P22004 513 aa8.94□□□□□ -0.98
SKP1-213ENST00000524288 RASIP1Q5U651 963 aa8.94□□□□□ -0.98
SKP1-213ENST00000524288 PCNX4Q63HM2 1172 aa8.94□□□□□ -0.98
SKP1-213ENST00000524288 CBLL1Q75N03 491 aa8.94□□□□□ -0.98
SKP1-213ENST00000524288 PMFBP1Q8TBY8 1022 aa8.94□□□□□ -0.98
SKP1-213ENST00000524288 GMLQ99445 158 aa8.94□□□□□ -0.98
SKP1-213ENST00000524288 NEFMP07197 916 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 FGRP09769 529 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 ATF4P18848 351 aaPredicted RBP8.93□□□□□ -0.98
SKP1-213ENST00000524288 TFE3P19532 575 aaPredicted RBP8.93□□□□□ -0.98
SKP1-213ENST00000524288 SNAP47Q5SQN1 464 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 GOLM1Q8NBJ4 401 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 ISL2Q96A47 359 aa8.93□□□□□ -0.98
SKP1-213ENST00000524288 PAK6Q9NQU5 681 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms