RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 CBX1P83916 185 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 VGLL4Q14135 290 aa9.39□□□□□ -0.91
LIMCH1-219ENST00000514096 DTNBO60941 627 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 BRPF1P55201 1214 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 PLS1Q14651 629 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 L1TD1Q5T7N2 865 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 ZGPATQ8N5A5 531 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 PUS7LQ9H0K6 701 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 RANBP2P49792 3224 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 CCL15-CCL14A0A0B4J2E2 113 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 IRF6O14896 467 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 PPFIA3O75145 1194 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 CYP2C8P10632 490 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 CCL15Q16663 113 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 ZNF384Q8TF68 577 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 LAMA2P24043 3122 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 CASP8AP2Q9UKL3 1982 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 DUOX1Q9NRD9 1551 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 USP17L12C9JPN9 530 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 USP17L21D6R901 530 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 TPM2P07951 284 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 FAM227BQ96M60 508 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 R3HDMLQ9H3Y0 253 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 SERPINA10Q9UK55 444 aa9.38□□□□□ -0.91
LIMCH1-219ENST00000514096 FER1L6Q2WGJ9 1857 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 ZNF831Q5JPB2 1677 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 MYO9BQ13459 2157 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 SPDYE2Q495Y8 402 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 PIK3R5Q8WYR1 880 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 FAM198AQ9UFP1 575 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 CPA4Q9UI42 421 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 LAMB2P55268 1798 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 HMGCS2P54868 508 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 ZNF280AP59817 542 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 MTX1Q13505 466 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 TAF1CQ15572 869 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 SLF2Q8IX21 1173 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 BANK1Q8NDB2 785 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 ZC3H15Q8WU90 426 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 MKNK2Q9HBH9 465 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 LAMA3Q16787 3333 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 ANKRD36CQ5JPF3 1778 aa9.37□□□□□ -0.91
LIMCH1-219ENST00000514096 PLCD1P51178 756 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 RAB11FIP4Q86YS3 637 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 DNAJC5GQ8N7S2 189 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 GPATCH11Q8N954 259 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 VPS33BQ9H267 617 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 DIAPH3Q9NSV4 1193 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 R3HCC1Q9Y3T6 440 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 MAST3O60307 1309 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 COL1A1P02452 1464 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 FAM47AQ5JRC9 791 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 ZKSCAN3Q9BRR0 538 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 DCTPP1Q9H773 170 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 MROH7-TTC4A0A0A0MT08 1334 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 DNAH12Q6ZR08 3092 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 RANBP6O60518 1105 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 USP2O75604 605 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 GH2P01242 217 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 HLA-DOAP06340 250 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 HMGB1P09429 215 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 GSTO1P78417 241 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 BRCA1P38398 1863 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 FAM205AQ6ZU69 1335 aa9.36□□□□□ -0.91
LIMCH1-219ENST00000514096 KIAA1551Q9HCM1 1747 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 NRXN2Q9P2S2 1712 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 WDHD1O75717 1129 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 CHD1LQ86WJ1 897 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 STX8Q9UNK0 236 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 ERC2O15083 957 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 RAB11FIP3O75154 756 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 NOGQ13253 232 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 NOL8Q76FK4 1167 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 ZDHHC15Q96MV8 337 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 COL24A1Q17RW2 1714 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 DHX16O60231 1041 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 MAP3K9P80192 1104 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 CTDSPL2Q05D32 466 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 VPS53Q5VIR6 699 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 AMOTL1Q8IY63 956 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 ANKRD13AQ8IZ07 590 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 CRNKL1Q9BZJ0 848 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 TLL2Q9Y6L7 1015 aa9.35□□□□□ -0.91
LIMCH1-219ENST00000514096 ARFGEF1Q9Y6D6 1849 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 TRIOBPQ9H2D6 2365 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 CHMP4BP1P59074 171 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 CHST3Q7LGC8 479 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 SMAP1Q8IYB5 467 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 TRIM17Q9Y577 477 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 MYH3P11055 1940 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 CLSTN1O94985 981 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 PDE1AP54750 535 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 SOX10P56693 466 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 DCAF15Q66K64 600 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 SH3BP5LQ7L8J4 393 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 OSBP2Q969R2 916 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 ZNF341Q9BYN7 854 aa9.34□□□□□ -0.91
LIMCH1-219ENST00000514096 NAPBQ9H115 298 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms