RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 CCDC69A6NI79 296 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 CPLX1O14810 134 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 IFNAR1P17181 557 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 PDE4BQ07343 736 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 GRIK5Q16478 980 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 CCDC178Q5BJE1 867 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 MFSD14BQ5SR56 506 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 ANKS1AQ92625 1134 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 SYAP1Q96A49 352 aaPredicted RBP9.78□□□□□ -0.84
RNF4-220ENST00000513578 DDX11Q96FC9 970 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 UBAC1Q9BSL1 405 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 INCENPQ9NQS7 918 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 FAM217BQ9NTX9 383 aaPredicted RBP9.78□□□□□ -0.84
RNF4-220ENST00000513578 TAOK2Q9UL54 1235 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 CNPY2Q9Y2B0 182 aa9.78□□□□□ -0.84
RNF4-220ENST00000513578 SCN9AQ15858 1988 aa9.77□□□□□ -0.84
RNF4-220ENST00000513578 GOLGA8AA7E2F4 631 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 CALM1P0DP23 149 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 CALM2P0DP24 149 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 CALM3P0DP25 149 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 RHBDL3P58872 404 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 HDLBPQ00341 1268 aaKnown RBP9.77□□□□□ -0.85
RNF4-220ENST00000513578 DNM1Q05193 864 aaKnown RBP9.77□□□□□ -0.85
RNF4-220ENST00000513578 MSL1Q68DK7 614 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 HHIPL2Q6UWX4 724 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 NFXL1Q6ZNB6 911 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 IQCA1Q86XH1 822 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 AMOTL1Q8IY63 956 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 SUPT20HQ8NEM7 779 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 FBXO18Q8NFZ0 1043 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 SH3RF3Q8TEJ3 882 aaPredicted RBP9.77□□□□□ -0.85
RNF4-220ENST00000513578 WASF1Q92558 559 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 CHAMP1Q96JM3 812 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 ZSCAN10Q96SZ4 725 aaPredicted RBP9.77□□□□□ -0.85
RNF4-220ENST00000513578 MAP3K14Q99558 947 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 SENP2Q9HC62 589 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 TCP11L1Q9NUJ3 509 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 ORC3Q9UBD5 711 aaPredicted RBP9.77□□□□□ -0.85
RNF4-220ENST00000513578 CFAP45Q9UL16 551 aa9.77□□□□□ -0.85
RNF4-220ENST00000513578 NAP1L2Q9ULW6 460 aaPredicted RBP9.77□□□□□ -0.85
RNF4-220ENST00000513578 BRCA1P38398 1863 aaKnown RBP9.76□□□□□ -0.85
RNF4-220ENST00000513578 GOLGA6L3A6NEY3 463 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 DDAH1O94760 285 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 FMNL1O95466 1100 aaPredicted RBP9.76□□□□□ -0.85
RNF4-220ENST00000513578 CDC27P30260 824 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 ADD1P35611 737 aaKnown RBP9.76□□□□□ -0.85
RNF4-220ENST00000513578 BTDP43251 543 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 USP5P45974 858 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 MRE11P49959 708 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 GTF2IP78347 998 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 DIXDC1Q155Q3 683 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 RTN1Q16799 776 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 RRP12Q5JTH9 1297 aaKnown RBP9.76□□□□□ -0.85
RNF4-220ENST00000513578 BRAPQ7Z569 592 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 ZNF654Q8IZM8 581 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 ZNF622Q969S3 477 aaKnown RBP eCLIP9.76□□□□□ -0.85
RNF4-220ENST00000513578 VPS33BQ9H267 617 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 ZNF287Q9HBT7 754 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 TOMM22Q9NS69 142 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 RBM28Q9NW13 759 aaKnown RBP9.76□□□□□ -0.85
RNF4-220ENST00000513578 MCM9Q9NXL9 1143 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 JAG2Q9Y219 1238 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 TNKSO95271 1327 aa9.76□□□□□ -0.85
RNF4-220ENST00000513578 CYP2D7A0A087X1C5 515 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 RIMBP2O15034 1052 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 GADD45BO75293 160 aaPredicted RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 LETM1O95202 739 aaPredicted RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 IARSP41252 1262 aaKnown RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 ZSCAN23Q3MJ62 389 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 STRIP1Q5VSL9 837 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 CAVIN1Q6NZI2 390 aaKnown RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 TTC6Q86TZ1 520 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 FERMT3Q86UX7 667 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 DGKHQ86XP1 1220 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 ENAHQ8N8S7 591 aaPredicted RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 FANCBQ8NB91 859 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 C8orf76Q96K31 380 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 ZNF396Q96N95 335 aaPredicted RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 GZF1Q9H116 711 aaPredicted RBP9.75□□□□□ -0.85
RNF4-220ENST00000513578 TMEM63CQ9P1W3 806 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 RCOR1Q9UKL0 485 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 DAGLAQ9Y4D2 1042 aa9.75□□□□□ -0.85
RNF4-220ENST00000513578 GREB1LQ9C091 1923 aaPredicted RBP9.74□□□□□ -0.85
RNF4-220ENST00000513578 FIBPO43427 364 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 RANBP6O60518 1105 aaKnown RBP9.74□□□□□ -0.85
RNF4-220ENST00000513578 USP17L8P0C7I0 530 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 NOVP48745 357 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 SSRP1Q08945 709 aaKnown RBP9.74□□□□□ -0.85
RNF4-220ENST00000513578 KIAA2012Q0VF49 1180 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 TROAPQ12815 778 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 IFIT1BQ5T764 474 aaKnown RBP9.74□□□□□ -0.85
RNF4-220ENST00000513578 C16orf86Q6ZW13 317 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 CATIPQ7Z7H3 387 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 NBPF11Q86T75 865 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 MICU3Q86XE3 530 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 TEX11Q8IYF3 940 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 CRACR2BQ8N4Y2 399 aaPredicted RBP9.74□□□□□ -0.85
RNF4-220ENST00000513578 CERS5Q8N5B7 392 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 TGFBRAP1Q8WUH2 860 aa9.74□□□□□ -0.85
RNF4-220ENST00000513578 LEO1Q8WVC0 666 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms