RNA–Protein interactions for RNA: ENST00000511774.1

HMGCS1-206, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 4

Gene HMGCS1, Length 500 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-206ENST00000511774 RHBDL3P58872 404 aa23.73■■□□□ 1.39
HMGCS1-206ENST00000511774 SPP2Q13103 211 aa23.73■■□□□ 1.39
HMGCS1-206ENST00000511774 PROCA1Q8NCQ7 364 aaPredicted RBP23.73■■□□□ 1.39
HMGCS1-206ENST00000511774 HMX1Q9NP08 348 aaPredicted RBP23.73■■□□□ 1.39
HMGCS1-206ENST00000511774 HMGCS2P54868 508 aa23.72■■□□□ 1.39
HMGCS1-206ENST00000511774 RASGRF1Q13972 1273 aa23.72■■□□□ 1.39
HMGCS1-206ENST00000511774 ASCC2Q9H1I8 757 aaPredicted RBP23.72■■□□□ 1.39
HMGCS1-206ENST00000511774 GNL3LQ9NVN8 582 aaKnown RBP23.72■■□□□ 1.39
HMGCS1-206ENST00000511774 SEMA3EO15041 775 aa23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 MAP3K21Q5TCX8 1036 aa23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 CCDC102BQ68D86 513 aa23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 FAM163AQ96GL9 167 aaPredicted RBP23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 UBE2OQ9C0C9 1292 aaKnown RBP23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 CEP126Q9P2H0 1117 aa23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 PNMA3Q9UL41 463 aa23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 PA2G4Q9UQ80 394 aaKnown RBP23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 PRUNE2Q8WUY3 3088 aa23.71■■□□□ 1.39
HMGCS1-206ENST00000511774 SIPA1L1O43166 1804 aa23.7■■□□□ 1.39
HMGCS1-206ENST00000511774 CIAO1O76071 339 aa23.7■■□□□ 1.38
HMGCS1-206ENST00000511774 SSH1Q8WYL5 1049 aa23.7■■□□□ 1.38
HMGCS1-206ENST00000511774 MROH7-TTC4A0A0A0MT08 1334 aa23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 PTPRCP08575 1304 aa23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 TBC1D12O60347 775 aa23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 COL6A1P12109 1028 aa23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 GCLCP48506 637 aaPredicted RBP23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 DZIP1Q86YF9 867 aaKnown RBP23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 ZNF280CQ8ND82 737 aa23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 ABCF2Q9UG63 623 aa23.69■■□□□ 1.38
HMGCS1-206ENST00000511774 ZNF521Q96K83 1311 aa23.68■■□□□ 1.38
HMGCS1-206ENST00000511774 ZBTB22O15209 634 aa23.68■■□□□ 1.38
HMGCS1-206ENST00000511774 CYP2B6P20813 491 aa23.68■■□□□ 1.38
HMGCS1-206ENST00000511774 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.68■■□□□ 1.38
HMGCS1-206ENST00000511774 MORF4L1Q9UBU8 362 aa23.68■■□□□ 1.38
HMGCS1-206ENST00000511774 FRMPD3Q5JV73 1810 aa23.68■■□□□ 1.38
HMGCS1-206ENST00000511774 GPR75-ASB3A0A0A6YYF3 556 aa23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 PRKAR2AP13861 404 aaKnown RBP23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 MECOMQ03112 1051 aa23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 LRRC26Q2I0M4 334 aa23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 GUCD1Q96NT3 240 aa23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 OSBPL5Q9H0X9 879 aaPredicted RBP23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 TXNRD2Q9NNW7 524 aa23.67■■□□□ 1.38
HMGCS1-206ENST00000511774 TIMM10P62072 90 aa23.66■■□□□ 1.38
HMGCS1-206ENST00000511774 JAG1P78504 1218 aa23.66■■□□□ 1.38
HMGCS1-206ENST00000511774 SH3D19Q5HYK7 790 aa23.66■■□□□ 1.38
HMGCS1-206ENST00000511774 FBXO3Q9UK99 471 aa23.66■■□□□ 1.38
HMGCS1-206ENST00000511774 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.66■■□□□ 1.38
HMGCS1-206ENST00000511774 COL2A1P02458 1487 aaPredicted RBP23.66■■□□□ 1.38
HMGCS1-206ENST00000511774 CAP2P40123 477 aa23.65■■□□□ 1.38
HMGCS1-206ENST00000511774 MDM2Q00987 491 aaPredicted RBP23.65■■□□□ 1.38
HMGCS1-206ENST00000511774 LHX8Q68G74 356 aa23.65■■□□□ 1.38
HMGCS1-206ENST00000511774 POTEEQ6S8J3 1075 aa23.65■■□□□ 1.38
HMGCS1-206ENST00000511774 ZGPATQ8N5A5 531 aaKnown RBP23.65■■□□□ 1.38
HMGCS1-206ENST00000511774 PDS5AQ29RF7 1337 aaKnown RBP23.64■■□□□ 1.38
HMGCS1-206ENST00000511774 CACNB2Q08289 660 aaPredicted RBP23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 CCL14Q16627 93 aa23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 SHROOM1Q2M3G4 852 aaPredicted RBP23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 P2RX7Q99572 595 aaKnown RBP23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 CDH23Q9H251 3354 aa23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 TTC28Q96AY4 2481 aa23.64■■□□□ 1.37
HMGCS1-206ENST00000511774 POTEB2H3BUK9 544 aa23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 NPM3O75607 178 aaKnown RBP23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 CCND3P30281 292 aaPredicted RBP23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 IL15P40933 162 aaPredicted RBP23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 PI16Q6UXB8 463 aa23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 USP6NLQ92738 828 aa23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 MAST2Q6P0Q8 1798 aa23.63■■□□□ 1.37
HMGCS1-206ENST00000511774 USP17L5A8MUK1 530 aa23.62■■□□□ 1.37
HMGCS1-206ENST00000511774 PABPC4Q13310 644 aaKnown RBP eCLIP23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 MTMR2Q13614 643 aa23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 Q3C1V9 767 aa23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 SLF2Q8IX21 1173 aa23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 FAM161BQ96MY7 647 aa23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 PORCNQ9H237 461 aa23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 CDK5RAP2Q96SN8 1893 aa23.61■■□□□ 1.37
HMGCS1-206ENST00000511774 UBTFL1P0CB47 393 aaPredicted RBP23.6■■□□□ 1.37
HMGCS1-206ENST00000511774 XRCC5P13010 732 aaKnown RBP23.6■■□□□ 1.37
HMGCS1-206ENST00000511774 TBC1D9Q6ZT07 1266 aa23.6■■□□□ 1.37
HMGCS1-206ENST00000511774 XAGE2Q96GT9 111 aa23.6■■□□□ 1.37
HMGCS1-206ENST00000511774 NUDT12Q9BQG2 462 aa23.6■■□□□ 1.37
HMGCS1-206ENST00000511774 RBPJLQ9UBG7 517 aa23.6■■□□□ 1.37
HMGCS1-206ENST00000511774 HERVK_113P62684 666 aa23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 SPTY2D1Q68D10 685 aaPredicted RBP23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 ERICH6Q7L0X2 663 aa23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 NSUN4Q96CB9 384 aaKnown RBP23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 DNAJC18Q9H819 358 aa23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 COPRSQ9NQ92 184 aa23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 HMG20BQ9P0W2 317 aa23.59■■□□□ 1.37
HMGCS1-206ENST00000511774 A0A1B0GUL7 405 aa23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 HOXA7P31268 230 aaPredicted RBP23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 IRX3P78415 501 aaPredicted RBP23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 MORN1Q5T089 497 aa23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 FAM9BQ8IZU0 186 aa23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 WDR18Q9BV38 432 aa23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 TBC1D2Q9BYX2 928 aa23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 LTBP2Q14767 1821 aa23.58■■□□□ 1.37
HMGCS1-206ENST00000511774 ZKSCAN1P17029 563 aaPredicted RBP23.57■■□□□ 1.36
HMGCS1-206ENST00000511774 BACE1P56817 501 aa23.57■■□□□ 1.36
HMGCS1-206ENST00000511774 TFCP2Q12800 502 aa23.57■■□□□ 1.36
HMGCS1-206ENST00000511774 FAM109BQ6ICB4 259 aaPredicted RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms