RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FOSBP53539 338 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 PSMD1Q99460 953 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 MARCH6O60337 910 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 BRD1O95696 1058 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 KIAA2012Q0VF49 1180 aa9.7□□□□□ -0.86
USP54-215ENST00000497106 DCP1AQ9NPI6 582 aaPredicted RBP9.7□□□□□ -0.86
USP54-215ENST00000497106 LRP5O75197 1615 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 SYT1P21579 422 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 POLLQ9UGP5 575 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 SAP30BPQ9UHR5 308 aaKnown RBP9.69□□□□□ -0.86
USP54-215ENST00000497106 GPR75-ASB3A0A0A6YYF3 556 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 CRKP46108 304 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 CCDC96Q2M329 555 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 PRKAB2O43741 272 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 PDIA3P30101 505 aaKnown RBP9.69□□□□□ -0.86
USP54-215ENST00000497106 CHST3Q7LGC8 479 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 ZNF654Q8IZM8 581 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 FBXL16Q8N461 479 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 LARP6Q9BRS8 491 aaKnown RBP9.69□□□□□ -0.86
USP54-215ENST00000497106 GLT8D2Q9H1C3 349 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 TNKSO95271 1327 aa9.69□□□□□ -0.86
USP54-215ENST00000497106 H7C1D1 291 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 PARP1P09874 1014 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 DPEP1P16444 411 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 TXLNAP40222 546 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 TFAP4Q01664 338 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 EXOSC10Q01780 885 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 KIAA0825Q8IV33 1275 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 FOXP4Q8IVH2 680 aaPredicted RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 FAM163AQ96GL9 167 aaPredicted RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 MRIQ9BWK5 157 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 ZNRF3Q9ULT6 936 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 LAMB2P55268 1798 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 RPS12P25398 132 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 FOXD4L6Q3SYB3 417 aaPredicted RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 FOXD4L3Q6VB84 417 aaPredicted RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 DGKHQ86XP1 1220 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 RASSF8Q8NHQ8 419 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 GPR101Q96P66 508 aaPredicted RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 PYM1Q9BRP8 204 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 SERPINA10Q9UK55 444 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 KINO60870 393 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 UBE2HP62256 183 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 R3HDM1Q15032 1099 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 TPRNQ4KMQ1 711 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 SGMS1Q86VZ5 419 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 CCDC47Q96A33 483 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 RRP36Q96EU6 259 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 ARHGEF10LQ9HCE6 1279 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 FAM13BQ9NYF5 915 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 TOP1P11387 765 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 NLRP5P59047 1200 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 DIXDC1Q155Q3 683 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 AOC3Q16853 763 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 RBM26Q5T8P6 1007 aaKnown RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 GZF1Q9H116 711 aaPredicted RBP9.68□□□□□ -0.86
USP54-215ENST00000497106 EHMT1Q9H9B1 1298 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 VEZTQ9HBM0 779 aa9.68□□□□□ -0.86
USP54-215ENST00000497106 TOB2Q14106 344 aaPredicted RBP9.67□□□□□ -0.86
USP54-215ENST00000497106 KLHL40Q2TBA0 621 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 TBC1D10CQ8IV04 446 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 KCNG4Q8TDN1 519 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 SH3RF3Q8TEJ3 882 aaPredicted RBP9.67□□□□□ -0.86
USP54-215ENST00000497106 STK36Q9NRP7 1315 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 CTR9Q6PD62 1173 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 APOA5Q6Q788 366 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 FAM177A1Q8N128 213 aaPredicted RBP9.67□□□□□ -0.86
USP54-215ENST00000497106 AGBL3Q8NEM8 1001 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 TRIM44Q96DX7 344 aaPredicted RBP9.67□□□□□ -0.86
USP54-215ENST00000497106 RIOK1Q9BRS2 568 aaKnown RBP9.67□□□□□ -0.86
USP54-215ENST00000497106 MTMR7Q9Y216 660 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 hCG_1984214I3L0E3 225 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 ZNF713Q8N859 430 aaPredicted RBP9.67□□□□□ -0.86
USP54-215ENST00000497106 IL25Q9H293 177 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 PI4KBQ9UBF8 816 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 SERPINB13Q9UIV8 391 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 ME1P48163 572 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 SCNN1DP51172 638 aa9.67□□□□□ -0.86
USP54-215ENST00000497106 CTAGE5O15320 804 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 ENTPD3O75355 529 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 CD2BP2O95400 341 aaKnown RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 USP17L8P0C7I0 530 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 KLRK1P26718 216 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 DCAF15Q66K64 600 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 FANCBQ8NB91 859 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 NAP1L4Q99733 375 aaKnown RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 DDX19AQ9NUU7 478 aaKnown RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 PNMA2Q9UL42 364 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 DAGLAQ9Y4D2 1042 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 NF2P35240 595 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 C12orf60Q5U649 245 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 GALNT17Q6IS24 598 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 RSBN1LQ6PCB5 846 aaPredicted RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 CCDC144CPQ8IYA2 1237 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 RTFDC1Q9BY42 306 aaPredicted RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 RNF26Q9BY78 433 aaPredicted RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 RGS17Q9UGC6 210 aaPredicted RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 MYH14Q7Z406 1995 aaKnown RBP9.66□□□□□ -0.86
USP54-215ENST00000497106 CCDC194A0A1B0GVG4 234 aa9.66□□□□□ -0.86
USP54-215ENST00000497106 GNA11P29992 359 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms