RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 USP31Q70CQ4 1352 aa18.42■□□□□ 0.54
CCDC88B-209ENST00000494080 TDRD12Q587J7 1177 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 SEC31BQ9NQW1 1179 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 USO1O60763 962 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 USP28Q96RU2 1077 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 PYM1Q9BRP8 204 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 ADGRL3Q9HAR2 1447 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 LARGE1O95461 756 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 CYP2E1P05181 493 aaPredicted RBP18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 EIF6P56537 245 aaKnown RBP18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 SLFNL1Q499Z3 407 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 TAF4BQ92750 862 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 CAPZA3Q96KX2 299 aa18.41■□□□□ 0.54
CCDC88B-209ENST00000494080 PLCG2P16885 1265 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 RILPL1Q5EBL4 403 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 GUCA1BQ9UMX6 200 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 ATP2C2O75185 946 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 TNNI2P48788 182 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 HNRNPH2P55795 449 aaKnown RBP18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 HLTFQ14527 1009 aaKnown RBP eCLIP18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 IFNL3Q8IZI9 196 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 PIK3C2BO00750 1634 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 A0A087WWV3 80 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 USP17L12C9JPN9 530 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 USP17L21D6R901 530 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 ARHGAP6O43182 974 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 TCERG1LQ5VWI1 586 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 RABEP2Q9H5N1 569 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 ELP1O95163 1332 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 ZMYM1Q5SVZ6 1142 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 OTUD6BQ8N6M0 293 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 ATRIPQ8WXE1 791 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 EXOC1Q9NV70 894 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 MYO3AQ8NEV4 1616 aa18.4■□□□□ 0.54
CCDC88B-209ENST00000494080 ASIC1P78348 528 aa18.39■□□□□ 0.54
CCDC88B-209ENST00000494080 CCDC40Q4G0X9 1142 aa18.39■□□□□ 0.54
CCDC88B-209ENST00000494080 NLRP10Q86W26 655 aa18.39■□□□□ 0.54
CCDC88B-209ENST00000494080 KCNH3Q9ULD8 1083 aa18.39■□□□□ 0.54
CCDC88B-209ENST00000494080 CDC42BPGQ6DT37 1551 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 MAST3O60307 1309 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 SEC31AO94979 1220 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 IL6STP40189 918 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 CHRNDQ07001 517 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 SCRN1Q12765 414 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 FAM47AQ5JRC9 791 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 PPM1EQ8WY54 764 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 C6orf50Q9HD87 102 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 ADGRB1O14514 1584 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 ZEB2O60315 1214 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 CCDC91Q7Z6B0 441 aa18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 GPR161Q8N6U8 529 aaKnown RBP18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 ZNF274Q96GC6 653 aaPredicted RBP18.39■□□□□ 0.53
CCDC88B-209ENST00000494080 PFKFB2O60825 505 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 ZNF202O95125 648 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 TUBB4BP68371 445 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 CKAP4Q07065 602 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 MAATS1Q7Z4T9 603 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 SYNE4Q8N205 404 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 ADAMTS13Q76LX8 1427 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 NF2P35240 595 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 USPL1Q5W0Q7 1092 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 PIK3AP1Q6ZUJ8 805 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 RRP36Q96EU6 259 aaKnown RBP18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 HSF2BPO75031 334 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 ARID5BQ14865 1188 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 MAPKAPK5Q8IW41 473 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 RMND1Q9NWS8 449 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 GGA1Q9UJY5 639 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 PARP3Q9Y6F1 533 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 ADCY9O60503 1353 aa18.38■□□□□ 0.53
CCDC88B-209ENST00000494080 POLR2DO15514 142 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 PPP1R12BO60237 982 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 FGFR1OPO95684 399 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 TUBBP07437 444 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 MYSM1Q5VVJ2 828 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 CEP57Q86XR8 500 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 AFAP1L1Q8TED9 768 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 OSBP2Q969R2 916 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 PDIA3P30101 505 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 DDIT3P35638 169 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 OGFOD1Q8N543 542 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 FAM76AQ8TAV0 307 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 RBM28Q9NW13 759 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 CRB1P82279 1406 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 IQGAP1P46940 1657 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 CIAO1O76071 339 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 TRIM21P19474 475 aaKnown RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 LETM2Q2VYF4 491 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 DTHD1Q6ZMT9 781 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 GPR108Q9NPR9 543 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 VPS54Q9P1Q0 977 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 NRXN1Q9ULB1 1477 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 AKR1B15C9JRZ8 316 aaPredicted RBP18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 PPARAQ07869 468 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 TNIP1Q15025 636 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 HLFQ16534 295 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 WDR66Q8TBY9 1149 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 CTAGE1Q96RT6 745 aa18.37■□□□□ 0.53
CCDC88B-209ENST00000494080 EFCAB8A8MWE9 144 aa18.36■□□□□ 0.53
CCDC88B-209ENST00000494080 H7C1W4 665 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms