RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ETF1P62495 437 aaKnown RBP8.48□□□□□ -1.05
PTPN4-212ENST00000488896 ZNF507Q8TCN5 953 aa8.48□□□□□ -1.05
PTPN4-212ENST00000488896 CRELD1Q96HD1 420 aa8.48□□□□□ -1.05
PTPN4-212ENST00000488896 PSMG3-AS1Q96PY0 264 aa8.48□□□□□ -1.05
PTPN4-212ENST00000488896 MIR1-1HGQ9H1L0 117 aa8.48□□□□□ -1.05
PTPN4-212ENST00000488896 BSDC1Q9NW68 430 aaPredicted RBP8.48□□□□□ -1.05
PTPN4-212ENST00000488896 CCDC39Q9UFE4 941 aa8.48□□□□□ -1.05
PTPN4-212ENST00000488896 USP31Q70CQ4 1352 aa8.48□□□□□ -1.05
PTPN4-212ENST00000488896 ST13P50502 369 aaKnown RBP8.47□□□□□ -1.05
PTPN4-212ENST00000488896 CYFIP1Q7L576 1253 aa8.47□□□□□ -1.05
PTPN4-212ENST00000488896 FBRSQ9HAH7 460 aa8.47□□□□□ -1.05
PTPN4-212ENST00000488896 U3KQE9 123 aa8.47□□□□□ -1.05
PTPN4-212ENST00000488896 ZNF326Q5BKZ1 582 aaKnown RBP8.46□□□□□ -1.06
PTPN4-212ENST00000488896 PLD6Q8N2A8 252 aaKnown RBP8.46□□□□□ -1.06
PTPN4-212ENST00000488896 NOC4LQ9BVI4 516 aaKnown RBP8.46□□□□□ -1.06
PTPN4-212ENST00000488896 PRDM10Q9NQV6 1147 aa8.46□□□□□ -1.06
PTPN4-212ENST00000488896 SNCAIPQ9Y6H5 919 aa8.46□□□□□ -1.06
PTPN4-212ENST00000488896 RLBP1P12271 317 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 ITIH2P19823 946 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 GRK4P32298 578 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 ARMCX6Q7L4S7 300 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 VSIG10LQ86VR7 867 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 TP53INP2Q8IXH6 220 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 KCT2Q8NC54 265 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 FLCNQ8NFG4 579 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 WNT10AQ9GZT5 417 aa8.45□□□□□ -1.06
PTPN4-212ENST00000488896 PHC3Q8NDX5 983 aa8.44□□□□□ -1.06
PTPN4-212ENST00000488896 GBP2P32456 591 aaPredicted RBP8.43□□□□□ -1.06
PTPN4-212ENST00000488896 BNIP3Q12983 259 aa8.43□□□□□ -1.06
PTPN4-212ENST00000488896 NKG7Q16617 165 aa8.43□□□□□ -1.06
PTPN4-212ENST00000488896 RELL1Q8IUW5 271 aa8.43□□□□□ -1.06
PTPN4-212ENST00000488896 XAGE3Q8WTP9 111 aa8.43□□□□□ -1.06
PTPN4-212ENST00000488896 MINDY4BA8MYZ0 360 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 GFRA2O00451 464 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 PRNPP04156 253 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 ITGAEP38570 1179 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 IRAK1P51617 712 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 SLBPQ14493 270 aaKnown RBP eCLIP8.42□□□□□ -1.06
PTPN4-212ENST00000488896 TSNAXIP1Q2TAA8 658 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 BNC2Q6ZN30 1099 aaPredicted RBP8.42□□□□□ -1.06
PTPN4-212ENST00000488896 ZNF574Q6ZN55 896 aaPredicted RBP8.42□□□□□ -1.06
PTPN4-212ENST00000488896 ABI1Q8IZP0 508 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 NETO1Q8TDF5 533 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 HEXIM2Q96MH2 286 aaKnown RBP8.42□□□□□ -1.06
PTPN4-212ENST00000488896 FOXQ1Q9C009 403 aa8.42□□□□□ -1.06
PTPN4-212ENST00000488896 LRIG2O94898 1065 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 PF4P02776 101 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 MFAP1P55081 439 aaKnown RBP8.41□□□□□ -1.06
PTPN4-212ENST00000488896 FAM160A1Q05DH4 1040 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 CAMK2GQ13555 558 aaPredicted RBP8.41□□□□□ -1.06
PTPN4-212ENST00000488896 NFXL1Q6ZNB6 911 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 HID1Q8IV36 788 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 MIPEPQ99797 713 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 DPH2Q9BQC3 489 aaPredicted RBP8.41□□□□□ -1.06
PTPN4-212ENST00000488896 SLC5A6Q9Y289 635 aa8.41□□□□□ -1.06
PTPN4-212ENST00000488896 PGRP06401 933 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 CD96P40200 585 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 OXCT1P55809 520 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 RPL6Q02878 288 aaKnown RBP8.4□□□□□ -1.06
PTPN4-212ENST00000488896 PRAMEF13Q5VWM6 474 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 BCL7CQ8WUZ0 217 aaPredicted RBP8.4□□□□□ -1.06
PTPN4-212ENST00000488896 FBXL18Q96ME1 805 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 TMEM74Q96NL1 305 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 GTF2IRD1Q9UHL9 959 aa8.4□□□□□ -1.06
PTPN4-212ENST00000488896 SLITRK5O94991 958 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 BPNT1O95861 308 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 EOMESO95936 686 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 CEACAM5P06731 702 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 LMNB2Q03252 620 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 DIEXFQ68CQ4 756 aaKnown RBP8.39□□□□□ -1.07
PTPN4-212ENST00000488896 FAM214BQ7L5A3 538 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 SPRED2Q7Z698 418 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 BCL11AQ9H165 835 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 PAK6Q9NQU5 681 aaPredicted RBP8.39□□□□□ -1.07
PTPN4-212ENST00000488896 TPX2Q9ULW0 747 aaKnown RBP8.39□□□□□ -1.07
PTPN4-212ENST00000488896 PLAGL2Q9UPG8 496 aa8.39□□□□□ -1.07
PTPN4-212ENST00000488896 RBAK-RBAKDNI3L0D1 243 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 F13A1P00488 732 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 IFI16Q16666 785 aaKnown RBP8.38□□□□□ -1.07
PTPN4-212ENST00000488896 SNAP47Q5SQN1 464 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 RIN3Q8TB24 985 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 COPRSQ9NQ92 184 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 PRDM5Q9NQX1 630 aaPredicted RBP8.38□□□□□ -1.07
PTPN4-212ENST00000488896 KBTBD4Q9NVX7 518 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 CORINQ9Y5Q5 1042 aa8.38□□□□□ -1.07
PTPN4-212ENST00000488896 GNAT3A8MTJ3 354 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 ZNF16P17020 682 aaPredicted RBP8.37□□□□□ -1.07
PTPN4-212ENST00000488896 PDE4BQ07343 736 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 AOC3Q16853 763 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 STK11IPQ8N1F8 1099 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 RHOVQ96L33 236 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 RSRP1Q9BUV0 290 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 TJP2Q9UDY2 1190 aa8.37□□□□□ -1.07
PTPN4-212ENST00000488896 CST3P01034 146 aaPredicted RBP8.36□□□□□ -1.07
PTPN4-212ENST00000488896 PWP1Q13610 501 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 MRPL58Q14197 206 aaKnown RBP8.36□□□□□ -1.07
PTPN4-212ENST00000488896 PLCL1Q15111 1095 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 MCTP1Q6DN14 999 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 LETMD1Q6P1Q0 360 aa8.36□□□□□ -1.07
PTPN4-212ENST00000488896 MFSD2AQ8NA29 543 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms