RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 OGFOD1Q8N543 542 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 SSX2IPQ9Y2D8 614 aa18.39■□□□□ 0.53
COL7A1-210ENST00000487017 GPT2Q8TD30 523 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 SMC6Q96SB8 1091 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 BCL2L12Q9HB09 334 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 RGS12O14924 1447 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 UTP14CQ5TAP6 766 aaKnown RBP18.38■□□□□ 0.53
COL7A1-210ENST00000487017 IFT20Q8IY31 132 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 GOLGA6CA6NDK9 693 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 GOLGA6DP0CG33 693 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 ASIC2Q16515 512 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 GOLGA6AQ9NYA3 693 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 SAP30BPQ9UHR5 308 aaKnown RBP18.38■□□□□ 0.53
COL7A1-210ENST00000487017 RTCBQ9Y3I0 505 aaKnown RBP18.38■□□□□ 0.53
COL7A1-210ENST00000487017 TEX11Q8IYF3 940 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 LPIN2Q92539 896 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 MTMR6Q9Y217 621 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 PTH1RQ03431 593 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 TRMT2AQ8IZ69 625 aaKnown RBP18.38■□□□□ 0.53
COL7A1-210ENST00000487017 ZSWIM6Q9HCJ5 1215 aa18.38■□□□□ 0.53
COL7A1-210ENST00000487017 A6NNZ2 444 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 SETDB1Q15047 1291 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 TUBB8Q3ZCM7 444 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 MYSM1Q5VVJ2 828 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 ZNF274Q96GC6 653 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-210ENST00000487017 USP44Q9H0E7 712 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 ZAP70P43403 619 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 PNOCQ13519 176 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 DDX23Q9BUQ8 820 aaKnown RBP18.37■□□□□ 0.53
COL7A1-210ENST00000487017 ATP2A2P16615 1042 aaKnown RBP18.37■□□□□ 0.53
COL7A1-210ENST00000487017 PKP1Q13835 747 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 DPH6Q7L8W6 267 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 KIAA1468Q9P260 1216 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 KCNJ14Q9UNX9 436 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 IBTKQ9P2D0 1353 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-210ENST00000487017 KDM5DQ9BY66 1539 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 HIBADHP31937 336 aaKnown RBP18.37■□□□□ 0.53
COL7A1-210ENST00000487017 HPDP32754 393 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-210ENST00000487017 CCDC63Q8NA47 563 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 NELFBQ8WX92 580 aa18.37■□□□□ 0.53
COL7A1-210ENST00000487017 NR1I2O75469 434 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 PRDM1O75626 825 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 TNFAIP3P21580 790 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 MRPS9P82933 396 aaKnown RBP18.36■□□□□ 0.53
COL7A1-210ENST00000487017 HAUS3Q68CZ6 603 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 ZNF532Q9HCE3 1301 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 TXKP42681 527 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 FAM135BQ49AJ0 1406 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 CALUO43852 315 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-210ENST00000487017 ATP5DP30049 168 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 SLC9C1Q4G0N8 1177 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 SPATA24Q86W54 205 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 GPCPD1Q9NPB8 672 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 NDUFAB1O14561 156 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 TRMT44Q8IYL2 757 aaKnown RBP18.36■□□□□ 0.53
COL7A1-210ENST00000487017 TPCN1Q9ULQ1 816 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 CEP83Q9Y592 693 aa18.36■□□□□ 0.53
COL7A1-210ENST00000487017 CETN3O15182 167 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 OAS2P29728 719 aaKnown RBP18.35■□□□□ 0.53
COL7A1-210ENST00000487017 LONRF3Q496Y0 759 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 SPATA5Q8NB90 893 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 MSANTD4Q8NCY6 345 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 ZBTB21Q9ULJ3 1066 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 NEURL1BA8MQ27 555 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 PFKFB1P16118 471 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 LRRC45Q96CN5 670 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 A0A0D9SFI3 127 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 IRX3P78415 501 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-210ENST00000487017 KRT25Q7Z3Z0 450 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 SLF1Q9BQI6 1058 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 NKIRAS1Q9NYS0 192 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 UTP11Q9Y3A2 253 aaKnown RBP18.35■□□□□ 0.53
COL7A1-210ENST00000487017 EIF4G3O43432 1585 aaKnown RBP18.35■□□□□ 0.53
COL7A1-210ENST00000487017 NONOQ15233 471 aaKnown RBP eCLIP18.35■□□□□ 0.53
COL7A1-210ENST00000487017 SERTAD1Q9UHV2 236 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 KDRP35968 1356 aa18.35■□□□□ 0.53
COL7A1-210ENST00000487017 ACTN4O43707 911 aaKnown RBP18.34■□□□□ 0.53
COL7A1-210ENST00000487017 WWC3Q9ULE0 1092 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.34■□□□□ 0.53
COL7A1-210ENST00000487017 GOLGA6BA6NDN3 693 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 PFKFB2O60825 505 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 SPOPO43791 374 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 A1BGP04217 495 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 AKNAD1Q5T1N1 836 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 CCDC51Q96ER9 411 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 SWAP70Q9UH65 585 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 MAGEA1P43355 309 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 RNASE9P60153 205 aaKnown RBP18.34■□□□□ 0.53
COL7A1-210ENST00000487017 KIFAP3Q92845 792 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 MAGI2Q86UL8 1455 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 RIMBP2O15034 1052 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 EDC3Q96F86 508 aaKnown RBP18.34■□□□□ 0.53
COL7A1-210ENST00000487017 USP28Q96RU2 1077 aa18.34■□□□□ 0.53
COL7A1-210ENST00000487017 MROH5Q6ZUA9 1318 aa18.33■□□□□ 0.53
COL7A1-210ENST00000487017 SAMD9Q5K651 1589 aa18.33■□□□□ 0.53
COL7A1-210ENST00000487017 ECM2O94769 699 aaPredicted RBP18.33■□□□□ 0.53
COL7A1-210ENST00000487017 GAS2L3Q86XJ1 694 aa18.33■□□□□ 0.53
COL7A1-210ENST00000487017 GPR161Q8N6U8 529 aaKnown RBP18.33■□□□□ 0.53
COL7A1-210ENST00000487017 SEC62Q99442 399 aaKnown RBP18.33■□□□□ 0.53
COL7A1-210ENST00000487017 LRWD1Q9UFC0 647 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms