RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 TRAPPC3LQ5T215 181 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 SV2BQ7L1I2 683 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 NOC4LQ9BVI4 516 aaKnown RBP8.85□□□□□ -0.99
PTCD3-208ENST00000469585 PLVAPQ9BX97 442 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 CEP44Q9C0F1 390 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 SOX17Q9H6I2 414 aaPredicted RBP8.85□□□□□ -0.99
PTCD3-208ENST00000469585 TMEM39AQ9NV64 488 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 PLEKHG1Q9ULL1 1385 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 CPS1P31327 1500 aa8.85□□□□□ -0.99
PTCD3-208ENST00000469585 CNTNAP5Q8WYK1 1306 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 ARHGAP23Q9P227 1491 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 DEAF1O75398 565 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-208ENST00000469585 ZNF157P51786 506 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-208ENST00000469585 FAM117BQ6P1L5 589 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 DTWD1Q8N5C7 304 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 GALNT11Q8NCW6 608 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 SRA1Q9HD15 236 aaKnown RBP8.84□□□□□ -0.99
PTCD3-208ENST00000469585 OSGEPQ9NPF4 335 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 GPN3Q9UHW5 284 aaPredicted RBP8.84□□□□□ -0.99
PTCD3-208ENST00000469585 ANKRD30BQ9BXX2 1392 aa8.84□□□□□ -0.99
PTCD3-208ENST00000469585 TMEM131LA2VDJ0 1609 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 A0A0A0MRY4 1105 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 TOM1O60784 492 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 CELA3AP09093 270 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 TCF3P15923 654 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 LTKP29376 864 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 ZNF76P36508 570 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 MAP4K3Q8IVH8 894 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 SLC7A3Q8WY07 619 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 SLC26A8Q96RN1 970 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 CARD10Q9BWT7 1032 aa8.83□□□□□ -1
PTCD3-208ENST00000469585 ZNF335Q9H4Z2 1342 aaPredicted RBP8.82□□□□□ -1
PTCD3-208ENST00000469585 DIP2AQ14689 1571 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 PIK3R2O00459 728 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 PAGE1O75459 146 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 HDLBPQ00341 1268 aaKnown RBP8.82□□□□□ -1
PTCD3-208ENST00000469585 C19orf57Q0VDD7 668 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 CCDC85BQ15834 202 aaPredicted RBP8.82□□□□□ -1
PTCD3-208ENST00000469585 METTL16Q86W50 562 aaKnown RBP8.82□□□□□ -1
PTCD3-208ENST00000469585 FMR1NBQ8N0W7 255 aaPredicted RBP8.82□□□□□ -1
PTCD3-208ENST00000469585 BEND7Q8N7W2 519 aaPredicted RBP8.82□□□□□ -1
PTCD3-208ENST00000469585 KLHL23Q8NBE8 558 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 KLHDC7BQ96G42 594 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 CLTCL1P53675 1640 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 IQSEC2Q5JU85 1478 aa8.82□□□□□ -1
PTCD3-208ENST00000469585 PPP2R3AQ06190 1150 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 PODNQ7Z5L7 613 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 FBXO11Q86XK2 927 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 FBXO41Q8TF61 875 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 RNF34Q969K3 372 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 TRIM56Q9BRZ2 755 aaKnown RBP8.81□□□□□ -1
PTCD3-208ENST00000469585 NRSN2Q9GZP1 204 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 TBX22Q9Y458 520 aa8.81□□□□□ -1
PTCD3-208ENST00000469585 KCNA6P17658 529 aa8.8□□□□□ -1
PTCD3-208ENST00000469585 ARL4DP49703 201 aa8.8□□□□□ -1
PTCD3-208ENST00000469585 ERMP1Q7Z2K6 904 aa8.8□□□□□ -1
PTCD3-208ENST00000469585 PIK3R4Q99570 1358 aa8.8□□□□□ -1
PTCD3-208ENST00000469585 NEURL4Q96JN8 1562 aa8.8□□□□□ -1
PTCD3-208ENST00000469585 ZFYVE9O95405 1425 aa8.8□□□□□ -1
PTCD3-208ENST00000469585 SPDYE3A6NKU9 549 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 FAM229AH3BQW9 127 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 DLL1O00548 723 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 BMP6P22004 513 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 RAC1P63000 192 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 GSTM4Q03013 218 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 SUZ12Q15022 739 aaKnown RBP8.79□□□□□ -1
PTCD3-208ENST00000469585 FOXD4L6Q3SYB3 417 aaPredicted RBP8.79□□□□□ -1
PTCD3-208ENST00000469585 FOXD4L3Q6VB84 417 aaPredicted RBP8.79□□□□□ -1
PTCD3-208ENST00000469585 HS2ST1Q7LGA3 356 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 STK35Q8TDR2 534 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 SCARF2Q96GP6 870 aaPredicted RBP8.79□□□□□ -1
PTCD3-208ENST00000469585 RSRP1Q9BUV0 290 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 PCGF6Q9BYE7 350 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 KCNK4Q9NYG8 393 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 NOP53Q9NZM5 478 aaKnown RBP8.79□□□□□ -1
PTCD3-208ENST00000469585 MYO5BQ9ULV0 1848 aa8.79□□□□□ -1
PTCD3-208ENST00000469585 MSH6P52701 1360 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 EIF4EBP3O60516 100 aaPredicted RBP8.78□□□□□ -1
PTCD3-208ENST00000469585 ADAM11O75078 769 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 NME2P22392 152 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 CD68P34810 354 aaPredicted RBP8.78□□□□□ -1
PTCD3-208ENST00000469585 C9orf131Q5VYM1 1079 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 SULF2Q8IWU5 870 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 DDX54Q8TDD1 881 aaKnown RBP8.78□□□□□ -1
PTCD3-208ENST00000469585 DCAF11Q8TEB1 546 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 GGT7Q9UJ14 662 aa8.78□□□□□ -1
PTCD3-208ENST00000469585 NKTRP30414 1462 aaKnown RBP8.77□□□□□ -1
PTCD3-208ENST00000469585 DDX3YO15523 660 aaKnown RBP8.77□□□□□ -1.01
PTCD3-208ENST00000469585 RLBP1P12271 317 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 ATF3P18847 181 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 COL8A1P27658 744 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 LIG3P49916 1009 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 TRIM28Q13263 835 aaKnown RBP8.77□□□□□ -1.01
PTCD3-208ENST00000469585 AP3B2Q13367 1082 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 RASIP1Q5U651 963 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 PCNX4Q63HM2 1172 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 PDZD3Q86UT5 571 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 NT5DC4Q86YG4 428 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 COPRSQ9NQ92 184 aa8.77□□□□□ -1.01
PTCD3-208ENST00000469585 CYP11A1P05108 521 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms