RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 CLASRPQ8N2M8 674 aaKnown RBP23.11■■□□□ 1.29
VARS-220ENST00000461874 ARMC5Q96C12 935 aa23.11■■□□□ 1.29
VARS-220ENST00000461874 PARK7Q99497 189 aaKnown RBP23.11■■□□□ 1.29
VARS-220ENST00000461874 ANTXR1Q9H6X2 564 aa23.11■■□□□ 1.29
VARS-220ENST00000461874 FLT1P17948 1338 aa23.1■■□□□ 1.29
VARS-220ENST00000461874 TRIM75PA6NK02 468 aa23.1■■□□□ 1.29
VARS-220ENST00000461874 APBB1O00213 710 aa23.1■■□□□ 1.29
VARS-220ENST00000461874 DYNLL1P63167 89 aaKnown RBP23.1■■□□□ 1.29
VARS-220ENST00000461874 RRP1BQ14684 758 aaKnown RBP23.1■■□□□ 1.29
VARS-220ENST00000461874 C20orf194Q5TEA3 1177 aa23.1■■□□□ 1.29
VARS-220ENST00000461874 CCDC84Q86UT8 332 aaPredicted RBP23.1■■□□□ 1.29
VARS-220ENST00000461874 MAST2Q6P0Q8 1798 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 RAB11FIP3O75154 756 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 GNRH1P01148 92 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 CAP2P40123 477 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 MAP3K12Q12852 859 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 TMED8Q6PL24 325 aaPredicted RBP23.09■■□□□ 1.29
VARS-220ENST00000461874 GADL1Q6ZQY3 521 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 MAGEB6Q8N7X4 407 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 SLC45A1Q9Y2W3 748 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 PTCH2Q9Y6C5 1203 aa23.09■■□□□ 1.29
VARS-220ENST00000461874 CYP2C8P10632 490 aa23.08■■□□□ 1.29
VARS-220ENST00000461874 METTL16Q86W50 562 aaKnown RBP23.08■■□□□ 1.29
VARS-220ENST00000461874 FOXP4Q8IVH2 680 aaPredicted RBP23.08■■□□□ 1.29
VARS-220ENST00000461874 IFIT2P09913 472 aaKnown RBP23.07■■□□□ 1.28
VARS-220ENST00000461874 CERS3Q8IU89 383 aa23.07■■□□□ 1.28
VARS-220ENST00000461874 MIGA1Q8NAN2 632 aa23.07■■□□□ 1.28
VARS-220ENST00000461874 PALD1Q9ULE6 856 aa23.07■■□□□ 1.28
VARS-220ENST00000461874 CENPFP49454 3210 aa23.07■■□□□ 1.28
VARS-220ENST00000461874 DOCK1Q14185 1865 aa23.07■■□□□ 1.28
VARS-220ENST00000461874 PDE4DIPQ5VU43 2346 aa23.07■■□□□ 1.28
VARS-220ENST00000461874 BCRP11274 1271 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 CTGFP29279 349 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 PSMC4P43686 418 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 SPP2Q13103 211 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 ZNF280CQ8ND82 737 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.06■■□□□ 1.28
VARS-220ENST00000461874 TBC1D2Q9BYX2 928 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 DNAJC18Q9H819 358 aa23.06■■□□□ 1.28
VARS-220ENST00000461874 MYO5AQ9Y4I1 1855 aaKnown RBP23.06■■□□□ 1.28
VARS-220ENST00000461874 TNRC18O15417 2968 aaPredicted RBP23.05■■□□□ 1.28
VARS-220ENST00000461874 USP17L5A8MUK1 530 aa23.05■■□□□ 1.28
VARS-220ENST00000461874 PRMT2P55345 433 aa23.05■■□□□ 1.28
VARS-220ENST00000461874 TTF1Q15361 905 aaPredicted RBP23.05■■□□□ 1.28
VARS-220ENST00000461874 SLC9C1Q4G0N8 1177 aa23.05■■□□□ 1.28
VARS-220ENST00000461874 ZNF333Q96JL9 665 aa23.05■■□□□ 1.28
VARS-220ENST00000461874 TRIM47Q96LD4 638 aa23.05■■□□□ 1.28
VARS-220ENST00000461874 SAP30BPQ9UHR5 308 aaKnown RBP23.05■■□□□ 1.28
VARS-220ENST00000461874 AGTPBP1Q9UPW5 1226 aa23.05■■□□□ 1.28
VARS-220ENST00000461874 KIAA0100Q14667 2235 aaKnown RBP23.05■■□□□ 1.28
VARS-220ENST00000461874 POTEFA5A3E0 1075 aa23.04■■□□□ 1.28
VARS-220ENST00000461874 ECM2O94769 699 aaPredicted RBP23.04■■□□□ 1.28
VARS-220ENST00000461874 NBPF11Q86T75 865 aa23.04■■□□□ 1.28
VARS-220ENST00000461874 CRACR2BQ8N4Y2 399 aaPredicted RBP23.04■■□□□ 1.28
VARS-220ENST00000461874 PHIPQ8WWQ0 1821 aa23.03■■□□□ 1.28
VARS-220ENST00000461874 HLA-DOAP06340 250 aa23.03■■□□□ 1.28
VARS-220ENST00000461874 PROCA1Q8NCQ7 364 aaPredicted RBP23.03■■□□□ 1.28
VARS-220ENST00000461874 TRIM34Q9BYJ4 488 aa23.03■■□□□ 1.28
VARS-220ENST00000461874 BCL11AQ9H165 835 aa23.03■■□□□ 1.28
VARS-220ENST00000461874 SRRDQ9UH36 339 aa23.03■■□□□ 1.28
VARS-220ENST00000461874 FMNL1O95466 1100 aaPredicted RBP23.02■■□□□ 1.28
VARS-220ENST00000461874 ASNSP08243 561 aa23.02■■□□□ 1.28
VARS-220ENST00000461874 HOXD10P28358 340 aa23.02■■□□□ 1.28
VARS-220ENST00000461874 USP5P45974 858 aa23.02■■□□□ 1.28
VARS-220ENST00000461874 JAG1P78504 1218 aa23.02■■□□□ 1.28
VARS-220ENST00000461874 TREML2Q5T2D2 321 aa23.02■■□□□ 1.28
VARS-220ENST00000461874 DNAJC2Q99543 621 aaKnown RBP23.02■■□□□ 1.28
VARS-220ENST00000461874 RIOK1Q9BRS2 568 aaKnown RBP23.02■■□□□ 1.28
VARS-220ENST00000461874 AS3MTQ9HBK9 375 aa23.02■■□□□ 1.28
VARS-220ENST00000461874 GOLIM4O00461 696 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 PDE6AP16499 860 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 OSBPP22059 807 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 HMGCS2P54868 508 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 SLC9C2Q5TAH2 1124 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 WDR18Q9BV38 432 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 GINM1Q9NU53 330 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 ZSWIM8A7E2V4 1837 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 SIPA1L1O43166 1804 aa23.01■■□□□ 1.27
VARS-220ENST00000461874 PTPRFP10586 1907 aa23■■□□□ 1.27
VARS-220ENST00000461874 SLC4A8Q2Y0W8 1093 aa23■■□□□ 1.27
VARS-220ENST00000461874 SH3D19Q5HYK7 790 aa23■■□□□ 1.27
VARS-220ENST00000461874 SMCR8Q8TEV9 937 aaPredicted RBP23■■□□□ 1.27
VARS-220ENST00000461874 TMEM106CQ9BVX2 250 aa23■■□□□ 1.27
VARS-220ENST00000461874 PNMA3Q9UL41 463 aa23■■□□□ 1.27
VARS-220ENST00000461874 CDK5RAP2Q96SN8 1893 aa22.99■■□□□ 1.27
VARS-220ENST00000461874 MAGEB6P1A0A0J9YX57 407 aa22.99■■□□□ 1.27
VARS-220ENST00000461874 ATP5JP18859 108 aa22.99■■□□□ 1.27
VARS-220ENST00000461874 FCGRTP55899 365 aa22.99■■□□□ 1.27
VARS-220ENST00000461874 SH3TC2Q8TF17 1288 aa22.99■■□□□ 1.27
VARS-220ENST00000461874 FOCADQ5VW36 1801 aa22.98■■□□□ 1.27
VARS-220ENST00000461874 GDF11O95390 407 aa22.98■■□□□ 1.27
VARS-220ENST00000461874 SHROOM1Q2M3G4 852 aaPredicted RBP22.98■■□□□ 1.27
VARS-220ENST00000461874 EDC3Q96F86 508 aaKnown RBP22.98■■□□□ 1.27
VARS-220ENST00000461874 LRRCC1Q9C099 1032 aa22.98■■□□□ 1.27
VARS-220ENST00000461874 EHD4Q9H223 541 aa22.98■■□□□ 1.27
VARS-220ENST00000461874 BOLA2Q9H3K6 86 aa22.98■■□□□ 1.27
VARS-220ENST00000461874 ZBTB21Q9ULJ3 1066 aa22.98■■□□□ 1.27
VARS-220ENST00000461874 BRCA2P51587 3418 aa22.97■■□□□ 1.27
VARS-220ENST00000461874 TCRBV5S4A2TA0A5A2 114 aa22.97■■□□□ 1.27
VARS-220ENST00000461874 EN2P19622 333 aaPredicted RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms