RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 L3MBTL2Q969R5 705 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC74AQ96AQ1 378 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 FMNL2Q96PY5 1086 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 IFT122Q9HBG6 1241 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 MARF1Q9Y4F3 1742 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 IL16Q14005 1332 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 MINDY4BA8MYZ0 360 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 GRM5P41594 1212 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 GTF2A1P52655 376 aaPredicted RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 EMP3P54852 163 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 LSM11P83369 360 aaKnown RBP eCLIP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC92Q53HC0 331 aaPredicted RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 ANKS3Q6ZW76 656 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 ERMP1Q7Z2K6 904 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CATIPQ7Z7H3 387 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 HNRNPLLQ8WVV9 542 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CNKSR1Q969H4 720 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 LZTS2Q9BRK4 669 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 PHACTR1Q9C0D0 580 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 NPHS2Q9NP85 383 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CABP1Q9NZU7 370 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 RABL2BQ9UNT1 228 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 ASXL1Q8IXJ9 1541 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 KAT6BQ8WYB5 2073 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 GNRH1P01148 92 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 INHBEP58166 350 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 RBM6P78332 1123 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CBLBQ13191 982 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CCAR1Q8IX12 1150 aaKnown RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 DRC7Q8IY82 874 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 STAG1Q8WVM7 1258 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 SPON2Q9BUD6 331 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 POLR3CQ9BUI4 534 aaPredicted RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 TEX13AQ9BXU3 409 aaPredicted RBP5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 EFR3BQ9Y2G0 817 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 CHMP3Q9Y3E7 222 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 KNSTRNQ9Y448 316 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 TLL2Q9Y6L7 1015 aa5.68□□□□□ -1.5
CCDC88A-209ENST00000456975 RAB3GAP2Q9H2M9 1393 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 HIP1RO75146 1068 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 LONRF1Q17RB8 773 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 KLHL10Q6JEL2 608 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 CTR9Q6PD62 1173 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 ANKRD13DQ6ZTN6 518 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 SLX1AQ9BQ83 275 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 BRMS1Q9HCU9 246 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 SNTG2Q9NY99 539 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 ADAMTS1Q9UHI8 967 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 DDX49Q9Y6V7 483 aaKnown RBP5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 BRWD3Q6RI45 1802 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 E9PCH4 1651 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 KIF5CO60282 957 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 TNFRSF21O75509 655 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 ECEL1O95672 775 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 CD53P19397 219 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 MAGEA8P43361 318 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 RTN1Q16799 776 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 PPP1R26Q5T8A7 1209 aaPredicted RBP5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 TTC16Q8NEE8 873 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 NGDNQ8NEJ9 315 aaKnown RBP5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 IL17RAQ96F46 866 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 NOL10Q9BSC4 688 aaKnown RBP5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 UTP6Q9NYH9 597 aaKnown RBP5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 AKAP2Q9Y2D5 859 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 NALCNQ8IZF0 1738 aa5.67□□□□□ -1.5
CCDC88A-209ENST00000456975 TRIM64CA6NLI5 447 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 LDHCP07864 332 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC175P0C221 793 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 NBPF7P0C2Y1 421 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 SETSIPP0DME0 302 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 ATICP31939 592 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 RIPK4P57078 832 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 KCTD2Q14681 263 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 CDC37L1Q7L3B6 337 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 CYP2U1Q7Z449 544 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 SAMD3Q8N6K7 520 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 SMCR8Q8TEV9 937 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 FRMD6Q96NE9 622 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 TRIM55Q9BYV6 548 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 DNAJC25Q9H1X3 360 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 GINM1Q9NU53 330 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 TMEM63CQ9P1W3 806 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 SFMBT1Q9UHJ3 866 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 SUFUQ9UMX1 484 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 SRCAPQ6ZRS2 3230 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 CDK2AP1O14519 115 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 CAND2O75155 1236 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 PCSK2P16519 638 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 TXLNAP40222 546 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 ZNF132P52740 706 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 IDI1Q13907 227 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 ESCO1Q5FWF5 840 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 ELOA2Q8IYF1 753 aaPredicted RBP5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 ZNF295-AS1Q8N0V1 137 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 RASGRP4Q8TDF6 673 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 BCO2Q9BYV7 579 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 FANCLQ9NW38 375 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 FAM8A1Q9UBU6 413 aa5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 THRAP3Q9Y2W1 955 aaKnown RBP5.66□□□□□ -1.5
CCDC88A-209ENST00000456975 MAP4K5Q9Y4K4 846 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms