RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 ZBTB48P10074 688 aaPredicted RBP22.48■■□□□ 1.19
SHH-204ENST00000441114 MAP3K10Q02779 954 aa22.48■■□□□ 1.19
SHH-204ENST00000441114 LRRFIP1Q32MZ4 808 aaKnown RBP22.48■■□□□ 1.19
SHH-204ENST00000441114 BAZ2AQ9UIF9 1905 aaKnown RBP22.47■■□□□ 1.19
SHH-204ENST00000441114 TBC1D12O60347 775 aa22.47■■□□□ 1.19
SHH-204ENST00000441114 POLR3DP05423 398 aaPredicted RBP22.47■■□□□ 1.19
SHH-204ENST00000441114 ERO1BQ86YB8 467 aa22.47■■□□□ 1.19
SHH-204ENST00000441114 APPBP2Q92624 585 aa22.47■■□□□ 1.19
SHH-204ENST00000441114 RILPL2Q969X0 211 aa22.47■■□□□ 1.19
SHH-204ENST00000441114 EVI5LQ96CN4 794 aa22.47■■□□□ 1.19
SHH-204ENST00000441114 ATAD5Q96QE3 1844 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 DOCK1Q14185 1865 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 SPDYE5A6NIY4 337 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 PDE4AP27815 886 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 SREBF2Q12772 1141 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 REM2Q8IYK8 340 aaPredicted RBP22.46■■□□□ 1.19
SHH-204ENST00000441114 OSBP2Q969R2 916 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 MCM9Q9NXL9 1143 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 HERC5Q9UII4 1024 aaKnown RBP22.46■■□□□ 1.19
SHH-204ENST00000441114 SLC4A4Q9Y6R1 1079 aa22.46■■□□□ 1.19
SHH-204ENST00000441114 MANSC4A6NHS7 340 aaPredicted RBP22.45■■□□□ 1.18
SHH-204ENST00000441114 TRPA1O75762 1119 aa22.45■■□□□ 1.18
SHH-204ENST00000441114 FOXP4Q8IVH2 680 aaPredicted RBP22.45■■□□□ 1.18
SHH-204ENST00000441114 SCYL3Q8IZE3 742 aa22.45■■□□□ 1.18
SHH-204ENST00000441114 SEC62Q99442 399 aaKnown RBP22.45■■□□□ 1.18
SHH-204ENST00000441114 DCP1AQ9NPI6 582 aaPredicted RBP22.45■■□□□ 1.18
SHH-204ENST00000441114 RNF186Q9NXI6 227 aa22.45■■□□□ 1.18
SHH-204ENST00000441114 M0R2C6 588 aa22.44■■□□□ 1.18
SHH-204ENST00000441114 TM4SF4P48230 202 aa22.44■■□□□ 1.18
SHH-204ENST00000441114 CTCFP49711 727 aaPredicted RBP22.44■■□□□ 1.18
SHH-204ENST00000441114 DDX60LQ5H9U9 1706 aaKnown RBP22.44■■□□□ 1.18
SHH-204ENST00000441114 NOL9Q5SY16 702 aaKnown RBP22.44■■□□□ 1.18
SHH-204ENST00000441114 TTC6Q86TZ1 520 aa22.44■■□□□ 1.18
SHH-204ENST00000441114 OSBPL3Q9H4L5 887 aa22.44■■□□□ 1.18
SHH-204ENST00000441114 PICK1Q9NRD5 415 aa22.44■■□□□ 1.18
SHH-204ENST00000441114 CTNND1O60716 968 aaKnown RBP22.43■■□□□ 1.18
SHH-204ENST00000441114 LBX1P52954 281 aa22.43■■□□□ 1.18
SHH-204ENST00000441114 STRBPQ96SI9 672 aaKnown RBP22.43■■□□□ 1.18
SHH-204ENST00000441114 ATP8A2Q9NTI2 1148 aa22.43■■□□□ 1.18
SHH-204ENST00000441114 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.43■■□□□ 1.18
SHH-204ENST00000441114 LAMB1P07942 1786 aa22.43■■□□□ 1.18
SHH-204ENST00000441114 IRF6O14896 467 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 CYP2D6P10635 497 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 HSPA8P11142 646 aaKnown RBP22.42■■□□□ 1.18
SHH-204ENST00000441114 PLCD1P51178 756 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 EVX2Q03828 476 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 PPATQ06203 517 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 PPIL2Q13356 520 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 RRP1BQ14684 758 aaKnown RBP22.42■■□□□ 1.18
SHH-204ENST00000441114 CCDC84Q86UT8 332 aaPredicted RBP22.42■■□□□ 1.18
SHH-204ENST00000441114 DDRGK1Q96HY6 314 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 DNAJC18Q9H819 358 aa22.42■■□□□ 1.18
SHH-204ENST00000441114 CCL15-CCL14A0A0B4J2E2 113 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 GPAA1O43292 621 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 CA12O43570 354 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 GTF2A2P52657 109 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 INHBEP58166 350 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 CCL15Q16663 113 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 ZMYM1Q5SVZ6 1142 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 MS4A4AQ96JQ5 239 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 SERPINB13Q9UIV8 391 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 ZHX2Q9Y6X8 837 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 PCNTO95613 3336 aa22.41■■□□□ 1.18
SHH-204ENST00000441114 GDF11O95390 407 aa22.4■■□□□ 1.18
SHH-204ENST00000441114 APPP05067 770 aa22.4■■□□□ 1.18
SHH-204ENST00000441114 PTPRAP18433 802 aa22.4■■□□□ 1.18
SHH-204ENST00000441114 CAP2P40123 477 aa22.4■■□□□ 1.18
SHH-204ENST00000441114 METTL16Q86W50 562 aaKnown RBP22.4■■□□□ 1.18
SHH-204ENST00000441114 IFNL1Q8IU54 200 aa22.4■■□□□ 1.18
SHH-204ENST00000441114 PHIPQ8WWQ0 1821 aa22.39■■□□□ 1.17
SHH-204ENST00000441114 CYP2D7A0A087X1C5 515 aa22.39■■□□□ 1.17
SHH-204ENST00000441114 TBC1D8O95759 1140 aa22.39■■□□□ 1.17
SHH-204ENST00000441114 SNAPC2Q13487 334 aa22.39■■□□□ 1.17
SHH-204ENST00000441114 CCDC129Q6ZRS4 1044 aa22.39■■□□□ 1.17
SHH-204ENST00000441114 CCDC136Q96JN2 1154 aa22.39■■□□□ 1.17
SHH-204ENST00000441114 MYH8P13535 1937 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 GSG1L2A8MUP6 293 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 USP17L12C9JPN9 530 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 USP17L21D6R901 530 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 IGF2BP3O00425 579 aaKnown RBP eCLIP22.38■■□□□ 1.17
SHH-204ENST00000441114 SHROOM1Q2M3G4 852 aaPredicted RBP22.38■■□□□ 1.17
SHH-204ENST00000441114 AMOTL1Q8IY63 956 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 BRI3BPQ8WY22 251 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 PTPN18Q99952 460 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 EHD4Q9H223 541 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 SAGE1Q9NXZ1 904 aa22.38■■□□□ 1.17
SHH-204ENST00000441114 TESPA1A2RU30 521 aaPredicted RBP22.37■■□□□ 1.17
SHH-204ENST00000441114 CETPP11597 493 aa22.37■■□□□ 1.17
SHH-204ENST00000441114 JAG1P78504 1218 aa22.37■■□□□ 1.17
SHH-204ENST00000441114 OTUD7BQ6GQQ9 843 aa22.37■■□□□ 1.17
SHH-204ENST00000441114 CENPQQ7L2Z9 268 aaPredicted RBP22.37■■□□□ 1.17
SHH-204ENST00000441114 DYNLL2Q96FJ2 89 aa22.37■■□□□ 1.17
SHH-204ENST00000441114 FAM227BQ96M60 508 aa22.37■■□□□ 1.17
SHH-204ENST00000441114 SMIM22K7EJ46 135 aa22.36■■□□□ 1.17
SHH-204ENST00000441114 GNAT2P19087 354 aa22.36■■□□□ 1.17
SHH-204ENST00000441114 NMIQ13287 307 aaPredicted RBP22.36■■□□□ 1.17
SHH-204ENST00000441114 CTR9Q6PD62 1173 aa22.36■■□□□ 1.17
SHH-204ENST00000441114 TRIM75PA6NK02 468 aa22.35■■□□□ 1.17
SHH-204ENST00000441114 PATL2C9JE40 543 aaKnown RBP22.35■■□□□ 1.17
SHH-204ENST00000441114 SDSP20132 328 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms