RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 COG1Q8WTW3 980 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 GAL3ST3Q96A11 431 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 KLF16Q9BXK1 252 aaPredicted RBP6.51□□□□□ -1.37
VPS13A-207ENST00000419472 IQGAP2Q13576 1575 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 RAPGEF2Q9Y4G8 1499 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 CARMIL1Q5VZK9 1371 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 ACRP10323 421 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 ANKLE1Q8NAG6 615 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 WDR66Q8TBY9 1149 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 OTUD5Q96G74 571 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 GSX2Q9BZM3 304 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 ZNF576Q9H609 170 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 LRRC4BQ9NT99 713 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 TAGLN3Q9UI15 199 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 MAPRE3Q9UPY8 281 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 RPS6KL1Q9Y6S9 549 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 RGS20O76081 388 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 GUCY2CP25092 1073 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 PRICKLE2Q7Z3G6 844 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 SVIPQ8NHG7 77 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 KISS1RQ969F8 398 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-207ENST00000419472 EHMT1Q9H9B1 1298 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 OSGEPQ9NPF4 335 aa6.5□□□□□ -1.37
VPS13A-207ENST00000419472 A0A096LPE4 126 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 A0A1W2PPZ6 126 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 IMPDH2P12268 514 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 TCIRG1Q13488 830 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 VPS72Q15906 364 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 LGR4Q9BXB1 951 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 SLC5A4Q9NY91 659 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 PHLDB1Q86UU1 1377 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 A0A1W2PNR3 127 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 SUSD5O60279 629 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 IL31Q6EBC2 164 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 NLRP8Q86W28 1048 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 FAM9BQ8IZU0 186 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 SCYL1Q96KG9 808 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 PKNOX2Q96KN3 472 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 NSUN5Q96P11 429 aaKnown RBP6.49□□□□□ -1.37
VPS13A-207ENST00000419472 KIF2CQ99661 725 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 ZNF180Q9UJW8 692 aa6.49□□□□□ -1.37
VPS13A-207ENST00000419472 MRPS23Q9Y3D9 190 aaKnown RBP6.49□□□□□ -1.37
VPS13A-207ENST00000419472 MAFGO15525 162 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 PCBP1Q15365 356 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS13A-207ENST00000419472 CCDC84Q86UT8 332 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-207ENST00000419472 C19orf47Q8N9M1 422 aaKnown RBP6.48□□□□□ -1.37
VPS13A-207ENST00000419472 UGGT2Q9NYU1 1516 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 NFKBIEO00221 500 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 GABRDO14764 452 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 NRDCO43847 1150 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 RFPL3O75679 317 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 BDNFP23560 247 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 CTSOP43234 321 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-207ENST00000419472 NEK3P51956 506 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 SETDB1Q15047 1291 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 PKN3Q6P5Z2 889 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 ZSCAN1Q8NBB4 408 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 ZNF669Q96BR6 464 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-207ENST00000419472 SLC26A8Q96RN1 970 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 RUSC1Q9BVN2 902 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 RHOBTB2Q9BYZ6 727 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 TMX4Q9H1E5 349 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-207ENST00000419472 ARHGEF4Q9NR80 690 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 TRHDEQ9UKU6 1024 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 DAAM1Q9Y4D1 1078 aa6.48□□□□□ -1.37
VPS13A-207ENST00000419472 VSTM5A8MXK1 200 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 SEPT7Q16181 437 aaKnown RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 FAM102BQ5T8I3 360 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 KIAA1211LQ6NV74 962 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 LIAT1Q6ZQX7 453 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 TPH2Q8IWU9 490 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 MUC3BQ9H195 1237 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 TMEM39AQ9NV64 488 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 FAM86C1Q9NVL1 165 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 CORINQ9Y5Q5 1042 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 KAT6BQ8WYB5 2073 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 PRG4Q92954 1404 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 DNAJA2O60884 412 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 CD2BP2O95400 341 aaKnown RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 FGAP02671 866 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 RARAP10276 462 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 WDR4P57081 412 aaKnown RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 TMPRSS15P98073 1019 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 ZNF460Q14592 562 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 STAT4Q14765 748 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 DDX46Q7L014 1031 aaKnown RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 TCEAL8Q8IYN2 117 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 MAGEB6Q8N7X4 407 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 E2F7Q96AV8 911 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 CBX8Q9HC52 389 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 GPAMQ9HCL2 828 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 GPC6Q9Y625 555 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-207ENST00000419472 CARMIL2Q6F5E8 1435 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 PRXQ9BXM0 1461 aa6.47□□□□□ -1.37
VPS13A-207ENST00000419472 DNAJC25-GNG10A0A024R161 153 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 ID4P47928 161 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 UNC5AQ6ZN44 842 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 ZBTB46Q86UZ6 589 aa6.46□□□□□ -1.37
VPS13A-207ENST00000419472 LRRC47Q8N1G4 583 aaKnown RBP6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms