RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CHD1LQ86WJ1 897 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 VPS37DQ86XT2 251 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 TDRD7Q8NHU6 1098 aaKnown RBP11.25□□□□□ -0.61
VPS53-203ENST00000401468 XAGE2Q96GT9 111 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 CCDC136Q96JN2 1154 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 DEFB129Q9H1M3 183 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 R3HDMLQ9H3Y0 253 aa11.25□□□□□ -0.61
VPS53-203ENST00000401468 PDS5AQ29RF7 1337 aaKnown RBP11.25□□□□□ -0.61
VPS53-203ENST00000401468 MGAMO43451 1857 aa11.24□□□□□ -0.61
VPS53-203ENST00000401468 SPDYE16A6NNV3 312 aaPredicted RBP11.24□□□□□ -0.61
VPS53-203ENST00000401468 SMARCA5O60264 1052 aaPredicted RBP11.24□□□□□ -0.61
VPS53-203ENST00000401468 ADORA1P30542 326 aa11.24□□□□□ -0.61
VPS53-203ENST00000401468 APOBEC3FQ8IUX4 373 aaKnown RBP11.24□□□□□ -0.61
VPS53-203ENST00000401468 CCDC102AQ96A19 550 aa11.24□□□□□ -0.61
VPS53-203ENST00000401468 IL1RAPL2Q9NP60 686 aa11.24□□□□□ -0.61
VPS53-203ENST00000401468 STAP2Q9UGK3 403 aa11.24□□□□□ -0.61
VPS53-203ENST00000401468 SEMA3EO15041 775 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 NF2P35240 595 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 ANKRD45Q5TZF3 282 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 CCDC102BQ68D86 513 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 B4GALNT3Q6L9W6 998 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 AACSQ86V21 672 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS53-203ENST00000401468 DBNDD2Q9BQY9 259 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 TMEM39BQ9GZU3 492 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 OSBPL3Q9H4L5 887 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 TLR7Q9NYK1 1049 aaKnown RBP11.23□□□□□ -0.61
VPS53-203ENST00000401468 KIAA1468Q9P260 1216 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 ZNF70Q9UC06 446 aaPredicted RBP11.23□□□□□ -0.61
VPS53-203ENST00000401468 PHIPQ8WWQ0 1821 aa11.23□□□□□ -0.61
VPS53-203ENST00000401468 APBB1O00213 710 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 MAP3K7O43318 606 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 CRKP46108 304 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 RASA3Q14644 834 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 CAVIN4Q5BKX8 364 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 TTC41PQ6P2S7 1318 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 FAM205AQ6ZU69 1335 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 DOCK3Q8IZD9 2030 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 ANKK1Q8NFD2 765 aa11.22□□□□□ -0.61
VPS53-203ENST00000401468 CCDC8Q9H0W5 538 aaPredicted RBP11.22□□□□□ -0.61
VPS53-203ENST00000401468 FOCADQ5VW36 1801 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 GJA5P36382 358 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 PHKA1P46020 1223 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 SOX10P56693 466 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 DIXDC1Q155Q3 683 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 ARMC9Q7Z3E5 817 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 PI4K2BQ8TCG2 481 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 ELP3Q9H9T3 547 aa11.21□□□□□ -0.61
VPS53-203ENST00000401468 HTTP42858 3142 aa11.21□□□□□ -0.62
VPS53-203ENST00000401468 MYH1P12882 1939 aa11.21□□□□□ -0.62
VPS53-203ENST00000401468 SALL1Q9NSC2 1324 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 MYO1BO43795 1136 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 IFIT2P09913 472 aaKnown RBP11.2□□□□□ -0.62
VPS53-203ENST00000401468 UQCRFS1P1P0C7P4 283 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 SLURP2P0DP57 97 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 ATP5JP18859 108 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 MX1P20591 662 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 FKBP1AP62942 108 aaKnown RBP11.2□□□□□ -0.62
VPS53-203ENST00000401468 RASGRF1Q13972 1273 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 PLEKHM2Q8IWE5 1019 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 OTUD7AQ8TE49 926 aaPredicted RBP11.2□□□□□ -0.62
VPS53-203ENST00000401468 NEUROD6Q96NK8 337 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 LNPKQ9C0E8 428 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 DOCK1Q14185 1865 aa11.2□□□□□ -0.62
VPS53-203ENST00000401468 TRIM6-TRIM34B2RNG4 842 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 CA12O43570 354 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 IGSF3O75054 1194 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 USP2O75604 605 aaPredicted RBP11.19□□□□□ -0.62
VPS53-203ENST00000401468 MCAMP43121 646 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 PDE1AP54750 535 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 FKBP1BP68106 108 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 TSR1Q2NL82 804 aaKnown RBP11.19□□□□□ -0.62
VPS53-203ENST00000401468 CCDC158Q5M9N0 1113 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 LDLRAD1Q5T700 205 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 SPRYD7Q5W111 196 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 LAPTM4BQ86VI4 370 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 MTMR14Q8NCE2 650 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 SLC10A4Q96EP9 437 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 WNK4Q96J92 1243 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 ECHDC1Q9NTX5 307 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 GNL3LQ9NVN8 582 aaKnown RBP11.19□□□□□ -0.62
VPS53-203ENST00000401468 GTF3C3Q9Y5Q9 886 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 SIPA1L1O43166 1804 aa11.19□□□□□ -0.62
VPS53-203ENST00000401468 MYH8P13535 1937 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 IGF2BP3O00425 579 aaKnown RBP eCLIP11.18□□□□□ -0.62
VPS53-203ENST00000401468 PRDX5P30044 214 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 TCP10Q12799 353 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 PI16Q6UXB8 463 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 ZNF296Q8WUU4 475 aaPredicted RBP11.18□□□□□ -0.62
VPS53-203ENST00000401468 TEPSINQ96N21 525 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 HAUS7Q99871 368 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 HMG20BQ9P0W2 317 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 SEPT9Q9UHD8 586 aaPredicted RBP11.18□□□□□ -0.62
VPS53-203ENST00000401468 DENND2AQ9ULE3 1009 aa11.18□□□□□ -0.62
VPS53-203ENST00000401468 GRXCR2A6NFK2 248 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 TTC39AQ5SRH9 613 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 GORABQ5T7V8 394 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 MIGA2Q7L4E1 593 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 TICAM2Q86XR7 235 aa11.17□□□□□ -0.62
VPS53-203ENST00000401468 SPATA5Q8NB90 893 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms