RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 RAPGEF3O95398 923 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 ZNF569Q5MCW4 686 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 THUMPD2Q9BTF0 503 aaKnown RBP9.95□□□□□ -0.82
SYNE1-209ENST00000367257 TM6SF1Q9BZW5 370 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 RBSNQ9H1K0 784 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 AMOTL2Q9Y2J4 779 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 CAPN7Q9Y6W3 813 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 MAP3K5Q99683 1374 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 ADGRF5Q8IZF2 1346 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 SRGAP1Q7Z6B7 1085 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC84Q86UT8 332 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-209ENST00000367257 N4BP2L2Q92802 583 aaPredicted RBP9.95□□□□□ -0.82
SYNE1-209ENST00000367257 FRMD4BQ9Y2L6 1034 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 PTPDC1A2A3K4 754 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 MYO1CO00159 1063 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 LUC7L3O95232 432 aaKnown RBP9.95□□□□□ -0.82
SYNE1-209ENST00000367257 PPP1R7Q15435 360 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 TERF2Q15554 542 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 CFAP157Q5JU67 520 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 RUNDC3BQ96NL0 473 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 NOX5Q96PH1 765 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 SELENOSQ9BQE4 189 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 SLC24A3Q9HC58 644 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 PNMA2Q9UL42 364 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 SAMM50Q9Y512 469 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 MAST3O60307 1309 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 A0A087WUV0 522 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 PTGS1P23219 599 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 DNM1Q05193 864 aaKnown RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC92Q53HC0 331 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 RGS22Q8NE09 1264 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CXorf56Q9H5V9 222 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 GDPD2Q9HCC8 539 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 ZBTB40Q9NUA8 1239 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 PUF60Q9UHX1 559 aaKnown RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 UTP11Q9Y3A2 253 aaKnown RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 FAM169AQ9Y6X4 670 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CLTCL1P53675 1640 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CEP104O60308 925 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 STK10O94804 968 aaKnown RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 VIMP08670 466 aaKnown RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 ERCC5P28715 1186 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 MAGEA9P43362 315 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 DNA2P51530 1060 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 INF2Q27J81 1249 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC122Q5T0U0 273 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CEP85Q6P2H3 762 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 VTI1AQ96AJ9 217 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 USP26Q9BXU7 913 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 EVCP57679 992 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 MPRIPQ6WCQ1 1025 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 RAB3IPQ96QF0 476 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 SPATA31D1Q6ZQQ2 1576 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 ZBTB22O15209 634 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CHMLP26374 656 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 NT5C2P49902 561 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 NMIQ13287 307 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-209ENST00000367257 C8orf74Q6P047 294 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 TTC6Q86TZ1 520 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 TMOD4Q9NZQ9 345 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 TNRQ92752 1358 aa9.94□□□□□ -0.82
SYNE1-209ENST00000367257 CASQ2O14958 399 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 ZEB2O60315 1214 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 AFMP43652 599 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 AK2P54819 239 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 ZC3H6P61129 1189 aaKnown RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 P3H4Q92791 437 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 EYA3Q99504 573 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 TACO1Q9BSH4 297 aaKnown RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 NBPF3Q9H094 633 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 IFNKQ9P0W0 207 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 DENND2AQ9ULE3 1009 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 PTPRTO14522 1441 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 LIG3P49916 1009 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 CHMP4BP1P59074 171 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 SYT10Q6XYQ8 523 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 DHX58Q96C10 678 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 CALR3Q96L12 384 aaKnown RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 SEC62Q99442 399 aaKnown RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 CDCA7Q9BWT1 371 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 PTCD1O75127 700 aaKnown RBP9.93□□□□□ -0.82
SYNE1-209ENST00000367257 SMIM24O75264 130 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 NLRP12P59046 1061 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 HEATR3Q7Z4Q2 680 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 TBC1D31Q96DN5 1066 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 TMEM131LA2VDJ0 1609 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 RPS6KB1P23443 525 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 WDR44Q5JSH3 913 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 TRIML1Q8N9V2 468 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 NLRP3Q96P20 1036 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 RAB17Q9H0T7 212 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 MIS18AQ9NYP9 233 aa9.93□□□□□ -0.82
SYNE1-209ENST00000367257 ABCC3O15438 1527 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 FRMD3A2A2Y4 597 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 ZWINTO95229 277 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 HOOK2Q96ED9 719 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 PPP1R12CQ9BZL4 782 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 SLC8A3P57103 927 aa9.92□□□□□ -0.82
SYNE1-209ENST00000367257 YWHAEP62258 255 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms