RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 ZEB2O60315 1214 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 HOXB7P09629 217 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 PPP2R3AQ06190 1150 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 PLBD2Q8NHP8 589 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 AFAP1L1Q8TED9 768 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 LRRC59Q96AG4 307 aaKnown RBP7.2□□□□□ -1.26
UPF2-201ENST00000356352 ERO1AQ96HE7 468 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 ZRANB1Q9UGI0 708 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 ZNF518AQ6AHZ1 1483 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 CCNT1O60563 726 aaKnown RBP7.2□□□□□ -1.26
UPF2-201ENST00000356352 RHOXF2BP0C7M4 288 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 HSPA1LP34931 641 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 KRT9P35527 623 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 PAK1Q13153 545 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 CCDC62Q6P9F0 684 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 SYT10Q6XYQ8 523 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 CEP57Q86XR8 500 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 POTEDQ86YR6 584 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 IGSF22Q8N9C0 903 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 MLKLQ8NB16 471 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 SECISBP2LQ93073 1101 aaKnown RBP7.2□□□□□ -1.26
UPF2-201ENST00000356352 TEKT1Q969V4 418 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 TCEANC2Q96MN5 208 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 RHOXF2Q9BQY4 288 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 OGFRQ9NZT2 677 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 IMPACTQ9P2X3 320 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 PNMA2Q9UL42 364 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 RNMTO43148 476 aaKnown RBP7.2□□□□□ -1.26
UPF2-201ENST00000356352 UFL1O94874 794 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 EIF6P56537 245 aaKnown RBP7.2□□□□□ -1.26
UPF2-201ENST00000356352 ZNF174Q15697 407 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 MTHFSDQ2M296 383 aaKnown RBP7.2□□□□□ -1.26
UPF2-201ENST00000356352 IWS1Q96ST2 819 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 SLC5A4Q9NY91 659 aa7.2□□□□□ -1.26
UPF2-201ENST00000356352 SARNPP82979 210 aaKnown RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 GABPAQ06546 454 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 NONOQ15233 471 aaKnown RBP eCLIP7.19□□□□□ -1.26
UPF2-201ENST00000356352 GKAP1Q5VSY0 366 aaPredicted RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 CARD10Q9BWT7 1032 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 NUF2Q9BZD4 464 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 NOC2LQ9Y3T9 749 aaKnown RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 A2MP01023 1474 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 IBTKQ9P2D0 1353 aaPredicted RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 PDE8AO60658 829 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 CHMLP26374 656 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 TERF1P54274 439 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 ANO1Q5XXA6 986 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 C8orf58Q8NAV2 365 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 EPSTI1Q96J88 318 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 DNM3Q9UQ16 869 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 PA2G4Q9UQ80 394 aaKnown RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 CD2APQ9Y5K6 639 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 KDM3AQ9Y4C1 1321 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 EYA2O00167 538 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 FLOT1O75955 427 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 TMTC1Q8IUR5 882 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 CEP120Q8N960 986 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 P3H4Q92791 437 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 BICC1Q9H694 974 aaKnown RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 C19orf44Q9H6X5 657 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 GPCPD1Q9NPB8 672 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 EIF4G3O43432 1585 aaKnown RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 PIK3C2GO75747 1445 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 SATB1Q01826 763 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 SP4Q02446 784 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 PHLDB2Q86SQ0 1253 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 CSGALNACT2Q8N6G5 542 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 NFATC2IPQ8NCF5 419 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 NACA2Q9H009 215 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 DDX21Q9NR30 783 aaKnown RBP eCLIP7.19□□□□□ -1.26
UPF2-201ENST00000356352 FEZ2Q9UHY8 353 aaPredicted RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 KCNH3Q9ULD8 1083 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 HARSP12081 509 aaKnown RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 TSNAXIP1Q2TAA8 658 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 TTC38Q5R3I4 469 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 SDCCAG8Q86SQ7 713 aaPredicted RBP7.19□□□□□ -1.26
UPF2-201ENST00000356352 APPBP2Q92624 585 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 ATP2A3Q93084 1043 aa7.19□□□□□ -1.26
UPF2-201ENST00000356352 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.19□□□□□ -1.26
UPF2-201ENST00000356352 C11orf95C9JLR9 678 aaPredicted RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 H0YCG3 227 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 GNPATO15228 680 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 MAPK8IP2Q13387 824 aaPredicted RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 BIRC2Q13490 618 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 DNAJC21Q5F1R6 531 aaKnown RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 MAP3K21Q5TCX8 1036 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 HHATQ5VTY9 493 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 PIK3AP1Q6ZUJ8 805 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 OTUD6AQ7L8S5 288 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 NLRX1Q86UT6 975 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 NT5C3AQ9H0P0 336 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 MROH5Q6ZUA9 1318 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 CHMP2AO43633 222 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 PRPF6O94906 941 aaKnown RBP7.18□□□□□ -1.26
UPF2-201ENST00000356352 RFX1P22670 979 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 PAK2Q13177 524 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 NCAPH2Q6IBW4 605 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 DCUN1D2Q6PH85 259 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 TBC1D22AQ8WUA7 517 aa7.18□□□□□ -1.26
UPF2-201ENST00000356352 RIOK1Q9BRS2 568 aaKnown RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms