RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CAVIN4Q5BKX8 364 aa25.14■■□□□ 1.62
SHMT1-202ENST00000352886 RESP18Q5W5W9 173 aa25.14■■□□□ 1.62
SHMT1-202ENST00000352886 NBPF11Q86T75 865 aa25.14■■□□□ 1.62
SHMT1-202ENST00000352886 ZNF654Q8IZM8 581 aa25.14■■□□□ 1.62
SHMT1-202ENST00000352886 MINPP1Q9UNW1 487 aa25.14■■□□□ 1.62
SHMT1-202ENST00000352886 MYH6P13533 1939 aa25.14■■□□□ 1.61
SHMT1-202ENST00000352886 CCDC196A0A1B0GTZ2 297 aa25.14■■□□□ 1.61
SHMT1-202ENST00000352886 SAFBQ15424 915 aaKnown RBP eCLIP25.14■■□□□ 1.61
SHMT1-202ENST00000352886 DIS3L2Q8IYB7 885 aaKnown RBP25.14■■□□□ 1.61
SHMT1-202ENST00000352886 C16orf45Q96MC5 204 aaPredicted RBP25.14■■□□□ 1.61
SHMT1-202ENST00000352886 SMIM22K7EJ46 135 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 ISM2Q6H9L7 571 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 CRACR2BQ8N4Y2 399 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-202ENST00000352886 FANCBQ8NB91 859 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 TSC1Q92574 1164 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 RIOK1Q9BRS2 568 aaKnown RBP25.13■■□□□ 1.61
SHMT1-202ENST00000352886 FAM237AA0A1B0GTK4 181 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 NEMFO60524 1076 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 CUTAO60888 179 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 GTF2E1P29083 439 aaPredicted RBP25.13■■□□□ 1.61
SHMT1-202ENST00000352886 ESR2Q92731 530 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 ANAPC4Q9UJX5 808 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 SCN7AQ01118 1682 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 ZNF831Q5JPB2 1677 aa25.13■■□□□ 1.61
SHMT1-202ENST00000352886 DEXIO95424 95 aa25.12■■□□□ 1.61
SHMT1-202ENST00000352886 SMIM5Q71RC9 77 aa25.12■■□□□ 1.61
SHMT1-202ENST00000352886 CELF1Q92879 486 aaKnown RBP25.12■■□□□ 1.61
SHMT1-202ENST00000352886 TNKSO95271 1327 aa25.12■■□□□ 1.61
SHMT1-202ENST00000352886 FAM98CQ17RN3 349 aaKnown RBP25.12■■□□□ 1.61
SHMT1-202ENST00000352886 RCAN1P53805 252 aa25.11■■□□□ 1.61
SHMT1-202ENST00000352886 FAM84BQ96KN1 310 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-202ENST00000352886 MAP7D2Q96T17 732 aa25.11■■□□□ 1.61
SHMT1-202ENST00000352886 TUBE1Q9UJT0 475 aa25.11■■□□□ 1.61
SHMT1-202ENST00000352886 RIOK3O14730 519 aaKnown RBP25.11■■□□□ 1.61
SHMT1-202ENST00000352886 TOB1P50616 345 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-202ENST00000352886 DYNLL1P63167 89 aaKnown RBP25.11■■□□□ 1.61
SHMT1-202ENST00000352886 SEC23AQ15436 765 aa25.11■■□□□ 1.61
SHMT1-202ENST00000352886 TBC1D9BQ66K14 1250 aa25.11■■□□□ 1.61
SHMT1-202ENST00000352886 PNOCQ13519 176 aa25.1■■□□□ 1.61
SHMT1-202ENST00000352886 KRI1Q8N9T8 703 aaKnown RBP25.1■■□□□ 1.61
SHMT1-202ENST00000352886 FOXP1Q9H334 677 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-202ENST00000352886 SKILP12757 684 aa25.1■■□□□ 1.61
SHMT1-202ENST00000352886 TPM4P67936 248 aa25.1■■□□□ 1.61
SHMT1-202ENST00000352886 NCAPHQ15003 741 aa25.1■■□□□ 1.61
SHMT1-202ENST00000352886 KCNH3Q9ULD8 1083 aa25.1■■□□□ 1.61
SHMT1-202ENST00000352886 SMTNL1A8MU46 457 aa25.09■■□□□ 1.61
SHMT1-202ENST00000352886 SMC2O95347 1197 aa25.09■■□□□ 1.61
SHMT1-202ENST00000352886 XPO4Q9C0E2 1151 aaKnown RBP25.09■■□□□ 1.61
SHMT1-202ENST00000352886 MYH13Q9UKX3 1938 aa25.09■■□□□ 1.61
SHMT1-202ENST00000352886 DUOX1Q9NRD9 1551 aa25.09■■□□□ 1.61
SHMT1-202ENST00000352886 TPD52L1Q16890 204 aaPredicted RBP25.08■■□□□ 1.61
SHMT1-202ENST00000352886 LONRF3Q496Y0 759 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 ZNF384Q8TF68 577 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 IFNKQ9P0W0 207 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 CYP2D7A0A087X1C5 515 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 NR5A1Q13285 461 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 RILPL1Q5EBL4 403 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 BCL2L12Q9HB09 334 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 LTBP4Q8N2S1 1624 aa25.08■■□□□ 1.61
SHMT1-202ENST00000352886 TNNT1P13805 278 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 CCZ1BP86790 482 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 CCZ1P86791 482 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-202ENST00000352886 SPECC1Q5M775 1068 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 METTL16Q86W50 562 aaKnown RBP25.07■■□□□ 1.6
SHMT1-202ENST00000352886 CNNM3Q8NE01 707 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 CNTNAP4Q9C0A0 1308 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 KLRK1P26718 216 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 SLC10A5Q5PT55 438 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 KRBA2Q6ZNG9 492 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 ENAHQ8N8S7 591 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-202ENST00000352886 BRIP1Q9BX63 1249 aa25.07■■□□□ 1.6
SHMT1-202ENST00000352886 IKBKBO14920 756 aa25.06■■□□□ 1.6
SHMT1-202ENST00000352886 GSDMDP57764 484 aa25.06■■□□□ 1.6
SHMT1-202ENST00000352886 MTERF4Q7Z6M4 381 aaKnown RBP25.06■■□□□ 1.6
SHMT1-202ENST00000352886 ZSCAN10Q96SZ4 725 aaPredicted RBP25.06■■□□□ 1.6
SHMT1-202ENST00000352886 LMOD1P29536 600 aaPredicted RBP25.06■■□□□ 1.6
SHMT1-202ENST00000352886 OSBPL5Q9H0X9 879 aaPredicted RBP25.06■■□□□ 1.6
SHMT1-202ENST00000352886 IMPACTQ9P2X3 320 aa25.06■■□□□ 1.6
SHMT1-202ENST00000352886 PRDM1O75626 825 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 OXER1Q8TDS5 423 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 RNF26Q9BY78 433 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-202ENST00000352886 PCDHB6Q9Y5E3 794 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 GRIN1Q05586 938 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 PPP2R5BQ15173 497 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 PTF1AQ7RTS3 328 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 FBXO33Q7Z6M2 555 aa25.05■■□□□ 1.6
SHMT1-202ENST00000352886 FBXO2Q9UK22 296 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-202ENST00000352886 USP27XA6NNY8 438 aa25.04■■□□□ 1.6
SHMT1-202ENST00000352886 RPS8P62241 208 aaKnown RBP25.04■■□□□ 1.6
SHMT1-202ENST00000352886 SRP68Q9UHB9 627 aaKnown RBP25.04■■□□□ 1.6
SHMT1-202ENST00000352886 PTPREP23469 700 aa25.04■■□□□ 1.6
SHMT1-202ENST00000352886 PIP4K2BP78356 416 aa25.04■■□□□ 1.6
SHMT1-202ENST00000352886 AKAP17AQ02040 695 aaKnown RBP25.04■■□□□ 1.6
SHMT1-202ENST00000352886 IFIT1BQ5T764 474 aaKnown RBP25.04■■□□□ 1.6
SHMT1-202ENST00000352886 FOXP4Q8IVH2 680 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-202ENST00000352886 ZNF710Q8N1W2 664 aa25.04■■□□□ 1.6
SHMT1-202ENST00000352886 NSUN4Q96CB9 384 aaKnown RBP25.04■■□□□ 1.6
SHMT1-202ENST00000352886 HSD3B7Q9H2F3 369 aa25.04■■□□□ 1.6
SHMT1-202ENST00000352886 SEMA3EO15041 775 aa25.03■■□□□ 1.6
SHMT1-202ENST00000352886 CTR9Q6PD62 1173 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms