RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 RGMBQ6NW40 437 aa15.29■□□□□ 0.04
SS18-202ENST00000269138 CTR9Q6PD62 1173 aa15.29■□□□□ 0.04
SS18-202ENST00000269138 PAXIP1Q6ZW49 1069 aaPredicted RBP15.29■□□□□ 0.04
SS18-202ENST00000269138 DNAJC5GQ8N7S2 189 aa15.29■□□□□ 0.04
SS18-202ENST00000269138 ZKSCAN4Q969J2 545 aaPredicted RBP15.29■□□□□ 0.04
SS18-202ENST00000269138 WRNIP1Q96S55 665 aa15.29■□□□□ 0.04
SS18-202ENST00000269138 DNAJC18Q9H819 358 aa15.29■□□□□ 0.04
SS18-202ENST00000269138 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.29■□□□□ 0.04
SS18-202ENST00000269138 ZNF112Q9UJU3 913 aa15.29■□□□□ 0.04
SS18-202ENST00000269138 TBC1D12O60347 775 aa15.28■□□□□ 0.04
SS18-202ENST00000269138 HLA-DOAP06340 250 aa15.28■□□□□ 0.04
SS18-202ENST00000269138 ZNF157P51786 506 aaPredicted RBP15.28■□□□□ 0.04
SS18-202ENST00000269138 GRM1Q13255 1194 aa15.28■□□□□ 0.04
SS18-202ENST00000269138 TTC6Q86TZ1 520 aa15.28■□□□□ 0.04
SS18-202ENST00000269138 METTL16Q86W50 562 aaKnown RBP15.28■□□□□ 0.04
SS18-202ENST00000269138 FOXP4Q8IVH2 680 aaPredicted RBP15.28■□□□□ 0.04
SS18-202ENST00000269138 IFNL3Q8IZI9 196 aa15.28■□□□□ 0.04
SS18-202ENST00000269138 CCDC171Q6TFL3 1326 aa15.28■□□□□ 0.04
SS18-202ENST00000269138 VEGFBP49765 207 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 VGLL4Q14135 290 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 C12orf60Q5U649 245 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 GIMAP6Q6P9H5 292 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 ANKRD13AQ8IZ07 590 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 CRACR2BQ8N4Y2 399 aaPredicted RBP15.27■□□□□ 0.04
SS18-202ENST00000269138 DYNLL2Q96FJ2 89 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 DDRGK1Q96HY6 314 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 HHIPL1Q96JK4 782 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 ELP3Q9H9T3 547 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 GTF3C3Q9Y5Q9 886 aa15.27■□□□□ 0.04
SS18-202ENST00000269138 SIPA1L1O43166 1804 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 TDO2P48775 406 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 RASAL3Q86YV0 1011 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 CNKSR2Q8WXI2 1034 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 SLC10A4Q96EP9 437 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 CAPNS2Q96L46 248 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 HERC5Q9UII4 1024 aaKnown RBP15.27■□□□□ 0.03
SS18-202ENST00000269138 SERPINB13Q9UIV8 391 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 SNCAIPQ9Y6H5 919 aa15.27■□□□□ 0.03
SS18-202ENST00000269138 DDX60LQ5H9U9 1706 aaKnown RBP15.26■□□□□ 0.03
SS18-202ENST00000269138 MYH1P12882 1939 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 NAV1Q8NEY1 1877 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 MINDY4BA8MYZ0 360 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 FAM155AB1AL88 458 aaPredicted RBP15.26■□□□□ 0.03
SS18-202ENST00000269138 HSPD1P10809 573 aaKnown RBP15.26■□□□□ 0.03
SS18-202ENST00000269138 JAG1P78504 1218 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 GABPAQ06546 454 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 MKRN3Q13064 507 aaKnown RBP15.26■□□□□ 0.03
SS18-202ENST00000269138 SHROOM1Q2M3G4 852 aaPredicted RBP15.26■□□□□ 0.03
SS18-202ENST00000269138 SBK1Q52WX2 424 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 SLC44A5Q8NCS7 719 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 ZIC5Q96T25 663 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 TRIM34Q9BYJ4 488 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 EHD4Q9H223 541 aa15.26■□□□□ 0.03
SS18-202ENST00000269138 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.26■□□□□ 0.03
SS18-202ENST00000269138 AOC2O75106 756 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 SLC10A3P09131 477 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 GJA5P36382 358 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 STK11IPQ8N1F8 1099 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 NACAP1Q9BZK3 213 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 NAPBQ9H115 298 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 ARPP21Q9UBL0 812 aaPredicted RBP15.25■□□□□ 0.03
SS18-202ENST00000269138 CSADQ9Y600 493 aa15.25■□□□□ 0.03
SS18-202ENST00000269138 WDR33Q9C0J8 1336 aaKnown RBP15.25■□□□□ 0.03
SS18-202ENST00000269138 BAZ2AQ9UIF9 1905 aaKnown RBP15.25■□□□□ 0.03
SS18-202ENST00000269138 UNCXA6NJT0 531 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 SGSM2O43147 1006 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 FGAP02671 866 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 SHMT1P34896 483 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 MFAP1P55081 439 aaKnown RBP15.24■□□□□ 0.03
SS18-202ENST00000269138 ALX1Q15699 326 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 RUFY2Q8WXA3 655 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 CCDC102AQ96A19 550 aa15.24■□□□□ 0.03
SS18-202ENST00000269138 CTNND1O60716 968 aaKnown RBP15.23■□□□□ 0.03
SS18-202ENST00000269138 GDF11O95390 407 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 CAP2P40123 477 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 ECE1P42892 770 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 NOL9Q5SY16 702 aaKnown RBP15.23■□□□□ 0.03
SS18-202ENST00000269138 SPRYD7Q5W111 196 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 TATDN1Q6P1N9 297 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 CCDC84Q86UT8 332 aaPredicted RBP15.23■□□□□ 0.03
SS18-202ENST00000269138 AMOTL1Q8IY63 956 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 SCYL3Q8IZE3 742 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 WNK4Q96J92 1243 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 OTOFQ9HC10 1997 aa15.23■□□□□ 0.03
SS18-202ENST00000269138 CDC45O75419 566 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 CDK8P49336 464 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 PTH1RQ03431 593 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 OPTNQ96CV9 577 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 ESYT1Q9BSJ8 1104 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 RAD50Q92878 1312 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 SPDYE5A6NIY4 337 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 PTPRAP18433 802 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 PPARAQ07869 468 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 CERKLQ49MI3 558 aaPredicted RBP15.22■□□□□ 0.03
SS18-202ENST00000269138 C16orf86Q6ZW13 317 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 OTUD5Q96G74 571 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 INCENPQ9NQS7 918 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 TACC3Q9Y6A5 838 aa15.22■□□□□ 0.03
SS18-202ENST00000269138 KIF23Q02241 960 aaPredicted RBP15.21■□□□□ 0.03
SS18-202ENST00000269138 CTDSPL2Q05D32 466 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms