RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 TRIM27P14373 513 aa12.79□□□□□ -0.36
VPS50-201ENST00000251739 CTGFP29279 349 aa12.79□□□□□ -0.36
VPS50-201ENST00000251739 TIMM10P62072 90 aa12.79□□□□□ -0.36
VPS50-201ENST00000251739 SLC9C1Q4G0N8 1177 aa12.79□□□□□ -0.36
VPS50-201ENST00000251739 RANBP2P49792 3224 aaKnown RBP12.79□□□□□ -0.36
VPS50-201ENST00000251739 EN2P19622 333 aaPredicted RBP12.78□□□□□ -0.36
VPS50-201ENST00000251739 PRMT2P55345 433 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 TFCP2Q12800 502 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 GPAT2Q6NUI2 795 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 XAGE2Q96GT9 111 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 TRIM47Q96LD4 638 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 DDX4Q9NQI0 724 aaKnown RBP12.78□□□□□ -0.36
VPS50-201ENST00000251739 TNNQ9UQP3 1299 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 MROH7-TTC4A0A0A0MT08 1334 aa12.78□□□□□ -0.36
VPS50-201ENST00000251739 DDTLA6NHG4 134 aaPredicted RBP12.77□□□□□ -0.37
VPS50-201ENST00000251739 PDHXO00330 501 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 CXCL11O14625 94 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 BCRP11274 1271 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 RHBDL3P58872 404 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 MVPQ14764 893 aaKnown RBP12.77□□□□□ -0.37
VPS50-201ENST00000251739 SCYL3Q8IZE3 742 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 PCDH10Q9P2E7 1040 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 AKAP2Q9Y2D5 859 aa12.77□□□□□ -0.37
VPS50-201ENST00000251739 GPR75-ASB3A0A0A6YYF3 556 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 A0A0G2JLL6 359 aaPredicted RBP12.76□□□□□ -0.37
VPS50-201ENST00000251739 ARID4AP29374 1257 aaPredicted RBP12.76□□□□□ -0.37
VPS50-201ENST00000251739 BTDP43251 543 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 MECOMQ03112 1051 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 SPTY2D1Q68D10 685 aaPredicted RBP12.76□□□□□ -0.37
VPS50-201ENST00000251739 PI16Q6UXB8 463 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 ATF7IPQ6VMQ6 1270 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 PRRT2Q7Z6L0 340 aaPredicted RBP12.76□□□□□ -0.37
VPS50-201ENST00000251739 NBPF11Q86T75 865 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 DZIP1Q86YF9 867 aaKnown RBP12.76□□□□□ -0.37
VPS50-201ENST00000251739 HMG20BQ9P0W2 317 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 ABCF2Q9UG63 623 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 SRRDQ9UH36 339 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 CPA4Q9UI42 421 aa12.76□□□□□ -0.37
VPS50-201ENST00000251739 PNMA6EA0A0J9YXQ4 647 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 SLURP2P0DP57 97 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 PTPRAP18433 802 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 KIF22Q14807 665 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 SLF2Q8IX21 1173 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 SH3TC2Q8TF17 1288 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 NSUN4Q96CB9 384 aaKnown RBP12.75□□□□□ -0.37
VPS50-201ENST00000251739 PARK7Q99497 189 aaKnown RBP12.75□□□□□ -0.37
VPS50-201ENST00000251739 TSHZ2Q9NRE2 1034 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 AFG3L2Q9Y4W6 797 aa12.75□□□□□ -0.37
VPS50-201ENST00000251739 IPO8O15397 1037 aaKnown RBP12.74□□□□□ -0.37
VPS50-201ENST00000251739 BCAR3O75815 825 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 MAP4K4O95819 1239 aaPredicted RBP12.74□□□□□ -0.37
VPS50-201ENST00000251739 GNAI2P04899 355 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 OSBPP22059 807 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 PSMC4P43686 418 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 LHX8Q68G74 356 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 SPATA5Q8NB90 893 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 GCC1Q96CN9 775 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 SHISA4Q96DD7 197 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 SLC45A1Q9Y2W3 748 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 ZHX2Q9Y6X8 837 aa12.74□□□□□ -0.37
VPS50-201ENST00000251739 TBC1D12O60347 775 aa12.73□□□□□ -0.37
VPS50-201ENST00000251739 CTNND1O60716 968 aaKnown RBP12.73□□□□□ -0.37
VPS50-201ENST00000251739 CYP2C8P10632 490 aa12.73□□□□□ -0.37
VPS50-201ENST00000251739 MCAMP43121 646 aa12.73□□□□□ -0.37
VPS50-201ENST00000251739 ERICH6Q7L0X2 663 aa12.73□□□□□ -0.37
VPS50-201ENST00000251739 PLXNB2O15031 1838 aa12.72□□□□□ -0.37
VPS50-201ENST00000251739 PICALMQ13492 652 aa12.72□□□□□ -0.37
VPS50-201ENST00000251739 MTFR1Q15390 333 aa12.72□□□□□ -0.37
VPS50-201ENST00000251739 HABP4Q5JVS0 413 aaKnown RBP12.72□□□□□ -0.37
VPS50-201ENST00000251739 TBC1D9Q6ZT07 1266 aa12.72□□□□□ -0.37
VPS50-201ENST00000251739 FASTKD5Q7L8L6 764 aaKnown RBP12.72□□□□□ -0.37
VPS50-201ENST00000251739 ZSCAN29Q8IWY8 852 aaPredicted RBP12.72□□□□□ -0.37
VPS50-201ENST00000251739 GPR108Q9NPR9 543 aa12.72□□□□□ -0.37
VPS50-201ENST00000251739 PICK1Q9NRD5 415 aa12.72□□□□□ -0.37
VPS50-201ENST00000251739 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.72□□□□□ -0.37
VPS50-201ENST00000251739 DDX60LQ5H9U9 1706 aaKnown RBP12.71□□□□□ -0.37
VPS50-201ENST00000251739 SZT2Q5T011 3432 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 MYPNQ86TC9 1320 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 MYH1P12882 1939 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 ALPK3Q96L96 1907 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 GRK4P32298 578 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 PRKCZQ05513 592 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 SLC4A8Q2Y0W8 1093 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 MAMSTRQ6ZN01 415 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 UBE2Q1Q7Z7E8 422 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 CCDC84Q86UT8 332 aaPredicted RBP12.71□□□□□ -0.37
VPS50-201ENST00000251739 TMEM57Q8N5G2 664 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 SSH3Q8TE77 659 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 CLUAP1Q96AJ1 413 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 NEUROD6Q96NK8 337 aa12.71□□□□□ -0.37
VPS50-201ENST00000251739 OSBPL5Q9H0X9 879 aaPredicted RBP12.71□□□□□ -0.37
VPS50-201ENST00000251739 FAM196BA6NMK8 535 aa12.7□□□□□ -0.38
VPS50-201ENST00000251739 FMNL1O95466 1100 aaPredicted RBP12.7□□□□□ -0.38
VPS50-201ENST00000251739 LDHCP07864 332 aa12.7□□□□□ -0.38
VPS50-201ENST00000251739 UQCRFS1P1P0C7P4 283 aa12.7□□□□□ -0.38
VPS50-201ENST00000251739 GSTO1P78417 241 aa12.7□□□□□ -0.38
VPS50-201ENST00000251739 RRP1BQ14684 758 aaKnown RBP12.7□□□□□ -0.38
VPS50-201ENST00000251739 FRAT1Q92837 279 aaPredicted RBP12.7□□□□□ -0.38
VPS50-201ENST00000251739 AGTPBP1Q9UPW5 1226 aa12.7□□□□□ -0.38
VPS50-201ENST00000251739 TRIM75PA6NK02 468 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms