RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 PLECQ15149 4684 aaKnown RBP6.81□□□□□ -1.32
CIITA-204ENST00000570546 DNAH10Q8IVF4 4471 aa6.77□□□□□ -1.33
CIITA-204ENST00000570546 DNAH17Q9UFH2 4485 aa6.74□□□□□ -1.33
CIITA-204ENST00000570546 DNAH5Q8TE73 4624 aa6.72□□□□□ -1.33
CIITA-204ENST00000570546 LORP23490 312 aaPredicted RBP6.72□□□□□ -1.33
CIITA-204ENST00000570546 VPS13DQ5THJ4 4388 aa6.72□□□□□ -1.33
CIITA-204ENST00000570546 DNAH3Q8TD57 4116 aa6.68□□□□□ -1.34
CIITA-204ENST00000570546 DNAH11Q96DT5 4516 aa6.65□□□□□ -1.34
CIITA-204ENST00000570546 KRTAP10-12P60413 245 aa6.65□□□□□ -1.35
CIITA-204ENST00000570546 KRTAP23-1A1A580 65 aa6.62□□□□□ -1.35
CIITA-204ENST00000570546 DNAH2Q9P225 4427 aa6.59□□□□□ -1.35
CIITA-204ENST00000570546 INE1O15225 51 aa6.55□□□□□ -1.36
CIITA-204ENST00000570546 LCE3AQ5TA76 89 aa6.55□□□□□ -1.36
CIITA-204ENST00000570546 STARD9Q9P2P6 4700 aa6.54□□□□□ -1.36
CIITA-204ENST00000570546 DNAH8Q96JB1 4490 aa6.53□□□□□ -1.36
CIITA-204ENST00000570546 KRTAP12-3P60328 96 aa6.51□□□□□ -1.37
CIITA-204ENST00000570546 DYNC2H1Q8NCM8 4307 aaKnown RBP6.45□□□□□ -1.38
CIITA-204ENST00000570546 KRTAP4-1Q9BYQ7 146 aa6.45□□□□□ -1.38
CIITA-204ENST00000570546 DYNC1H1Q14204 4646 aaKnown RBP6.44□□□□□ -1.38
CIITA-204ENST00000570546 LRP1BQ9NZR2 4599 aa6.43□□□□□ -1.38
CIITA-204ENST00000570546 ANK2Q01484 3957 aa6.42□□□□□ -1.38
CIITA-204ENST00000570546 SACSQ9NZJ4 4579 aa6.41□□□□□ -1.38
CIITA-204ENST00000570546 FAT2Q9NYQ8 4349 aa6.37□□□□□ -1.39
CIITA-204ENST00000570546 CMYA5Q8N3K9 4069 aa6.32□□□□□ -1.4
CIITA-204ENST00000570546 KMT2AQ03164 3969 aa6.32□□□□□ -1.4
CIITA-204ENST00000570546 FAT1Q14517 4588 aa6.31□□□□□ -1.4
CIITA-204ENST00000570546 DNHD1Q96M86 4753 aa6.29□□□□□ -1.4
CIITA-204ENST00000570546 PRKDCP78527 4128 aaKnown RBP6.27□□□□□ -1.41
CIITA-204ENST00000570546 CRCT1Q9UGL9 99 aa6.26□□□□□ -1.41
CIITA-204ENST00000570546 VPS13BQ7Z7G8 4022 aa6.25□□□□□ -1.41
CIITA-204ENST00000570546 FRAS1Q86XX4 4008 aa6.23□□□□□ -1.41
CIITA-204ENST00000570546 DNAH6Q9C0G6 4158 aa6.22□□□□□ -1.41
CIITA-204ENST00000570546 MT1HP80294 61 aa6.2□□□□□ -1.42
CIITA-204ENST00000570546 SPRR2GQ9BYE4 73 aa6.17□□□□□ -1.42
CIITA-204ENST00000570546 HECTD4Q9Y4D8 3996 aa6.15□□□□□ -1.42
CIITA-204ENST00000570546 APOBP04114 4563 aaKnown RBP6.13□□□□□ -1.43
CIITA-204ENST00000570546 MT2AP02795 61 aa6.13□□□□□ -1.43
CIITA-204ENST00000570546 DNAH7Q8WXX0 4024 aa6.12□□□□□ -1.43
CIITA-204ENST00000570546 LYSTQ99698 3801 aa6.09□□□□□ -1.43
CIITA-204ENST00000570546 RYR1P21817 5038 aa6.07□□□□□ -1.44
CIITA-204ENST00000570546 MT1FP04733 61 aa6.03□□□□□ -1.44
CIITA-204ENST00000570546 KRTAP17-1Q9BYP8 105 aa6.01□□□□□ -1.45
CIITA-204ENST00000570546 KRTAP8-1Q8IUC2 63 aa5.97□□□□□ -1.45
CIITA-204ENST00000570546 FAT3Q8TDW7 4589 aa5.94□□□□□ -1.46
CIITA-204ENST00000570546 KRTAP10-5P60370 271 aa5.88□□□□□ -1.47
CIITA-204ENST00000570546 RYR3Q15413 4870 aa5.88□□□□□ -1.47
CIITA-204ENST00000570546 KRTAP19-5Q3LI72 72 aa5.87□□□□□ -1.47
CIITA-204ENST00000570546 MYCBP2O75592 4640 aa5.86□□□□□ -1.47
CIITA-204ENST00000570546 LRP1Q07954 4544 aaKnown RBP5.84□□□□□ -1.47
CIITA-204ENST00000570546 KRTAP19-1Q8IUB9 90 aa5.8□□□□□ -1.48
CIITA-204ENST00000570546 LCE3CQ5T5A8 94 aa5.8□□□□□ -1.48
CIITA-204ENST00000570546 RYR2Q92736 4967 aa5.8□□□□□ -1.48
CIITA-204ENST00000570546 HYDINQ4G0P3 5121 aa5.78□□□□□ -1.48
CIITA-204ENST00000570546 KRTAP19-8Q3LI54 63 aa5.75□□□□□ -1.49
CIITA-204ENST00000570546 KIAA1109Q2LD37 5005 aa5.74□□□□□ -1.49
CIITA-204ENST00000570546 KRTAP10-7P60409 375 aaPredicted RBP5.72□□□□□ -1.49
CIITA-204ENST00000570546 HSPG2P98160 4391 aa5.68□□□□□ -1.5
CIITA-204ENST00000570546 PKD1P98161 4303 aa5.66□□□□□ -1.5
CIITA-204ENST00000570546 MT1XP80297 61 aa5.65□□□□□ -1.51
CIITA-204ENST00000570546 PKHD1P08F94 4074 aa5.62□□□□□ -1.51
CIITA-204ENST00000570546 PKHD1L1Q86WI1 4243 aa5.61□□□□□ -1.51
CIITA-204ENST00000570546 MT1BP07438 61 aa5.59□□□□□ -1.52
CIITA-204ENST00000570546 KRTAP19-4Q3LI73 84 aa5.57□□□□□ -1.52
CIITA-204ENST00000570546 SPRR5A0A1B0GTR4 108 aa5.57□□□□□ -1.52
CIITA-204ENST00000570546 KRTAP9-8Q9BYQ0 159 aa5.56□□□□□ -1.52
CIITA-204ENST00000570546 LCE2CQ5TA81 110 aa5.55□□□□□ -1.52
CIITA-204ENST00000570546 LRP2P98164 4655 aa5.53□□□□□ -1.52
CIITA-204ENST00000570546 SPRR2FQ96RM1 72 aa5.52□□□□□ -1.53
CIITA-204ENST00000570546 TNXBP22105 4242 aa5.52□□□□□ -1.53
CIITA-204ENST00000570546 LPAP08519 4548 aa5.49□□□□□ -1.53
CIITA-204ENST00000570546 HERC1Q15751 4861 aa5.46□□□□□ -1.54
CIITA-204ENST00000570546 KRTAP9-3Q9BYQ3 159 aa5.41□□□□□ -1.54
CIITA-204ENST00000570546 KRTAP19-2Q3LHN2 52 aa5.4□□□□□ -1.54
CIITA-204ENST00000570546 HERC2O95714 4834 aa5.39□□□□□ -1.55
CIITA-204ENST00000570546 KMT2CQ8NEZ4 4911 aaKnown RBP5.38□□□□□ -1.55
CIITA-204ENST00000570546 KRTAP4-8A0A0G2JLE6 195 aa5.35□□□□□ -1.55
CIITA-204ENST00000570546 KRTAP4-8Q9BYQ9 185 aa5.35□□□□□ -1.55
CIITA-204ENST00000570546 BIRC6Q9NR09 4857 aa5.28□□□□□ -1.56
CIITA-204ENST00000570546 MT1GP13640 62 aa5.27□□□□□ -1.57
CIITA-204ENST00000570546 LCE3BQ5TA77 95 aa5.22□□□□□ -1.57
CIITA-204ENST00000570546 FLGP20930 4061 aaPredicted RBP5.21□□□□□ -1.58
CIITA-204ENST00000570546 MUC17Q685J3 4493 aa5.2□□□□□ -1.58
CIITA-204ENST00000570546 KRTAP12-4P60329 112 aa5.17□□□□□ -1.58
CIITA-204ENST00000570546 LCE2BO14633 110 aa5.14□□□□□ -1.59
CIITA-204ENST00000570546 SPRR2EP22531 72 aa5.13□□□□□ -1.59
CIITA-204ENST00000570546 SPRR2BP35325 72 aa5.13□□□□□ -1.59
CIITA-204ENST00000570546 SPRR2AP35326 72 aa5.13□□□□□ -1.59
CIITA-204ENST00000570546 PCLOQ9Y6V0 5065 aa5.12□□□□□ -1.59
CIITA-204ENST00000570546 KRTAP4-7Q9BYR0 210 aa5.1□□□□□ -1.59
CIITA-204ENST00000570546 MT1LQ93083 61 aa5.08□□□□□ -1.6
CIITA-204ENST00000570546 MT1EP04732 61 aa5.03□□□□□ -1.6
CIITA-204ENST00000570546 KRTAP19-3Q7Z4W3 81 aa5□□□□□ -1.61
CIITA-204ENST00000570546 EPPK1P58107 5090 aaKnown RBP4.98□□□□□ -1.61
CIITA-204ENST00000570546 ABCA13Q86UQ4 5058 aa4.97□□□□□ -1.61
CIITA-204ENST00000570546 SPRR2DP22532 72 aa4.96□□□□□ -1.62
CIITA-204ENST00000570546 LCE3DQ9BYE3 92 aa4.94□□□□□ -1.62
CIITA-204ENST00000570546 LCE3EQ5T5B0 92 aa4.87□□□□□ -1.63
CIITA-204ENST00000570546 MT1MQ8N339 61 aa4.83□□□□□ -1.64
CIITA-204ENST00000570546 LOC100996750A0A140TA64 210 aa4.8□□□□□ -1.64
CIITA-204ENST00000570546 KRTAP19-6Q3LI70 58 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms