RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 LCE3AQ5TA76 89 aa8.13□□□□□ -1.11
COL27A1-207ENST00000494090 VPS13CQ709C8 3753 aa8.1□□□□□ -1.11
COL27A1-207ENST00000494090 DNAH9Q9NYC9 4486 aa7.99□□□□□ -1.13
COL27A1-207ENST00000494090 KRTAP8-1Q8IUC2 63 aa7.93□□□□□ -1.14
COL27A1-207ENST00000494090 DNAH5Q8TE73 4624 aa7.91□□□□□ -1.14
COL27A1-207ENST00000494090 DNAH1Q9P2D7 4330 aa7.87□□□□□ -1.15
COL27A1-207ENST00000494090 DNAH10Q8IVF4 4471 aa7.83□□□□□ -1.16
COL27A1-207ENST00000494090 KRTAP4-1Q9BYQ7 146 aa7.79□□□□□ -1.16
COL27A1-207ENST00000494090 CSMD3Q7Z407 3707 aa7.79□□□□□ -1.16
COL27A1-207ENST00000494090 AKAP9Q99996 3911 aa7.75□□□□□ -1.17
COL27A1-207ENST00000494090 DNAH2Q9P225 4427 aa7.74□□□□□ -1.17
COL27A1-207ENST00000494090 PLECQ15149 4684 aaKnown RBP7.73□□□□□ -1.17
COL27A1-207ENST00000494090 DNAH11Q96DT5 4516 aa7.72□□□□□ -1.17
COL27A1-207ENST00000494090 KRTAP10-5P60370 271 aa7.71□□□□□ -1.17
COL27A1-207ENST00000494090 DNAH17Q9UFH2 4485 aa7.71□□□□□ -1.18
COL27A1-207ENST00000494090 ZNF469Q96JG9 3925 aaPredicted RBP7.67□□□□□ -1.18
COL27A1-207ENST00000494090 VPS13DQ5THJ4 4388 aa7.67□□□□□ -1.18
COL27A1-207ENST00000494090 MT1HP80294 61 aa7.65□□□□□ -1.18
COL27A1-207ENST00000494090 SPRR2GQ9BYE4 73 aa7.62□□□□□ -1.19
COL27A1-207ENST00000494090 MT2AP02795 61 aa7.57□□□□□ -1.2
COL27A1-207ENST00000494090 DYNC1H1Q14204 4646 aaKnown RBP7.5□□□□□ -1.21
COL27A1-207ENST00000494090 DNAH3Q8TD57 4116 aa7.47□□□□□ -1.21
COL27A1-207ENST00000494090 DNHD1Q96M86 4753 aa7.45□□□□□ -1.22
COL27A1-207ENST00000494090 LRP1BQ9NZR2 4599 aa7.44□□□□□ -1.22
COL27A1-207ENST00000494090 SACSQ9NZJ4 4579 aa7.42□□□□□ -1.22
COL27A1-207ENST00000494090 KRTAP19-4Q3LI73 84 aa7.42□□□□□ -1.22
COL27A1-207ENST00000494090 FAT1Q14517 4588 aa7.42□□□□□ -1.22
COL27A1-207ENST00000494090 DYNC2H1Q8NCM8 4307 aaKnown RBP7.4□□□□□ -1.22
COL27A1-207ENST00000494090 MT1FP04733 61 aa7.4□□□□□ -1.22
COL27A1-207ENST00000494090 KRTAP10-7P60409 375 aaPredicted RBP7.37□□□□□ -1.23
COL27A1-207ENST00000494090 STARD9Q9P2P6 4700 aa7.37□□□□□ -1.23
COL27A1-207ENST00000494090 FAT2Q9NYQ8 4349 aa7.36□□□□□ -1.23
COL27A1-207ENST00000494090 DNAH8Q96JB1 4490 aa7.34□□□□□ -1.23
COL27A1-207ENST00000494090 SPRR2FQ96RM1 72 aa7.31□□□□□ -1.24
COL27A1-207ENST00000494090 KRTAP19-5Q3LI72 72 aa7.28□□□□□ -1.24
COL27A1-207ENST00000494090 LCE3CQ5T5A8 94 aa7.23□□□□□ -1.25
COL27A1-207ENST00000494090 RYR1P21817 5038 aa7.23□□□□□ -1.25
COL27A1-207ENST00000494090 ANK2Q01484 3957 aa7.18□□□□□ -1.26
COL27A1-207ENST00000494090 APOBP04114 4563 aaKnown RBP7.16□□□□□ -1.26
COL27A1-207ENST00000494090 KRTAP19-8Q3LI54 63 aa7.08□□□□□ -1.28
COL27A1-207ENST00000494090 VPS13BQ7Z7G8 4022 aa7.07□□□□□ -1.28
COL27A1-207ENST00000494090 KRTAP19-1Q8IUB9 90 aa7.06□□□□□ -1.28
COL27A1-207ENST00000494090 KMT2AQ03164 3969 aa7.03□□□□□ -1.28
COL27A1-207ENST00000494090 PRKDCP78527 4128 aaKnown RBP7.03□□□□□ -1.28
COL27A1-207ENST00000494090 DNAH6Q9C0G6 4158 aa6.98□□□□□ -1.29
COL27A1-207ENST00000494090 KRTAP17-1Q9BYP8 105 aa6.98□□□□□ -1.29
COL27A1-207ENST00000494090 RYR3Q15413 4870 aa6.93□□□□□ -1.3
COL27A1-207ENST00000494090 DNAH7Q8WXX0 4024 aa6.91□□□□□ -1.3
COL27A1-207ENST00000494090 MT1XP80297 61 aa6.88□□□□□ -1.31
COL27A1-207ENST00000494090 SPRR2EP22531 72 aa6.88□□□□□ -1.31
COL27A1-207ENST00000494090 SPRR2BP35325 72 aa6.88□□□□□ -1.31
COL27A1-207ENST00000494090 SPRR2AP35326 72 aa6.88□□□□□ -1.31
COL27A1-207ENST00000494090 FAT3Q8TDW7 4589 aa6.86□□□□□ -1.31
COL27A1-207ENST00000494090 CMYA5Q8N3K9 4069 aa6.86□□□□□ -1.31
COL27A1-207ENST00000494090 LYSTQ99698 3801 aa6.82□□□□□ -1.32
COL27A1-207ENST00000494090 MT1BP07438 61 aa6.8□□□□□ -1.32
COL27A1-207ENST00000494090 MYCBP2O75592 4640 aa6.8□□□□□ -1.32
COL27A1-207ENST00000494090 LRP1Q07954 4544 aaKnown RBP6.79□□□□□ -1.32
COL27A1-207ENST00000494090 RYR2Q92736 4967 aa6.79□□□□□ -1.32
COL27A1-207ENST00000494090 FRAS1Q86XX4 4008 aa6.78□□□□□ -1.32
COL27A1-207ENST00000494090 KRTAP9-8Q9BYQ0 159 aa6.75□□□□□ -1.33
COL27A1-207ENST00000494090 SPRR5A0A1B0GTR4 108 aa6.75□□□□□ -1.33
COL27A1-207ENST00000494090 KIAA1109Q2LD37 5005 aa6.75□□□□□ -1.33
COL27A1-207ENST00000494090 HECTD4Q9Y4D8 3996 aa6.74□□□□□ -1.33
COL27A1-207ENST00000494090 SPRR2DP22532 72 aa6.68□□□□□ -1.34
COL27A1-207ENST00000494090 HERC1Q15751 4861 aa6.68□□□□□ -1.34
COL27A1-207ENST00000494090 LCE2BO14633 110 aa6.67□□□□□ -1.34
COL27A1-207ENST00000494090 KRTAP12-4P60329 112 aa6.65□□□□□ -1.34
COL27A1-207ENST00000494090 MT1GP13640 62 aa6.64□□□□□ -1.35
COL27A1-207ENST00000494090 LCE2CQ5TA81 110 aa6.64□□□□□ -1.35
COL27A1-207ENST00000494090 LCE3BQ5TA77 95 aa6.64□□□□□ -1.35
COL27A1-207ENST00000494090 HSPG2P98160 4391 aa6.63□□□□□ -1.35
COL27A1-207ENST00000494090 KRTAP9-3Q9BYQ3 159 aa6.6□□□□□ -1.35
COL27A1-207ENST00000494090 KRTAP4-8A0A0G2JLE6 195 aa6.53□□□□□ -1.36
COL27A1-207ENST00000494090 KRTAP4-8Q9BYQ9 185 aa6.53□□□□□ -1.36
COL27A1-207ENST00000494090 BIRC6Q9NR09 4857 aa6.51□□□□□ -1.37
COL27A1-207ENST00000494090 PKD1P98161 4303 aa6.45□□□□□ -1.38
COL27A1-207ENST00000494090 HERC2O95714 4834 aa6.45□□□□□ -1.38
COL27A1-207ENST00000494090 LCE3DQ9BYE3 92 aa6.38□□□□□ -1.39
COL27A1-207ENST00000494090 LRP2P98164 4655 aa6.38□□□□□ -1.39
COL27A1-207ENST00000494090 KRTAP19-2Q3LHN2 52 aa6.35□□□□□ -1.39
COL27A1-207ENST00000494090 HYDINQ4G0P3 5121 aa6.34□□□□□ -1.39
COL27A1-207ENST00000494090 KRTAP19-3Q7Z4W3 81 aa6.32□□□□□ -1.4
COL27A1-207ENST00000494090 LCE3EQ5T5B0 92 aa6.3□□□□□ -1.4
COL27A1-207ENST00000494090 PCLOQ9Y6V0 5065 aa6.28□□□□□ -1.4
COL27A1-207ENST00000494090 PKHD1L1Q86WI1 4243 aa6.27□□□□□ -1.41
COL27A1-207ENST00000494090 MT1LQ93083 61 aa6.25□□□□□ -1.41
COL27A1-207ENST00000494090 MT1EP04732 61 aa6.19□□□□□ -1.42
COL27A1-207ENST00000494090 KRTAP4-7Q9BYR0 210 aa6.18□□□□□ -1.42
COL27A1-207ENST00000494090 LPAP08519 4548 aa6.18□□□□□ -1.42
COL27A1-207ENST00000494090 PKHD1P08F94 4074 aa6.18□□□□□ -1.42
COL27A1-207ENST00000494090 TNXBP22105 4242 aa6.12□□□□□ -1.43
COL27A1-207ENST00000494090 LCE2DQ5TA82 110 aaPredicted RBP6.12□□□□□ -1.43
COL27A1-207ENST00000494090 MUC17Q685J3 4493 aa6.09□□□□□ -1.43
COL27A1-207ENST00000494090 KMT2CQ8NEZ4 4911 aaKnown RBP6.07□□□□□ -1.44
COL27A1-207ENST00000494090 FLGP20930 4061 aaPredicted RBP6.07□□□□□ -1.44
COL27A1-207ENST00000494090 MT3P25713 68 aa6.02□□□□□ -1.45
COL27A1-207ENST00000494090 KRTAP19-6Q3LI70 58 aa6.01□□□□□ -1.45
COL27A1-207ENST00000494090 MT1MQ8N339 61 aa5.98□□□□□ -1.45
COL27A1-207ENST00000494090 EPPK1P58107 5090 aaKnown RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms