RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 COL7A1Q02388 2944 aa1.7□□□□□ -2.14
HMGB1-204ENST00000399489 DNAH7Q8WXX0 4024 aa1.69□□□□□ -2.14
HMGB1-204ENST00000399489 IAPPP10997 89 aa1.69□□□□□ -2.14
HMGB1-204ENST00000399489 MINOS1Q5TGZ0 78 aa1.69□□□□□ -2.14
HMGB1-204ENST00000399489 STAB2Q8WWQ8 2551 aa1.68□□□□□ -2.14
HMGB1-204ENST00000399489 DYNC1H1Q14204 4646 aaKnown RBP1.68□□□□□ -2.14
HMGB1-204ENST00000399489 I3L2K1 104 aa1.68□□□□□ -2.14
HMGB1-204ENST00000399489 LYNX1P0DP58 116 aa1.68□□□□□ -2.14
HMGB1-204ENST00000399489 DNAH10Q8IVF4 4471 aa1.67□□□□□ -2.14
HMGB1-204ENST00000399489 FLG2Q5D862 2391 aaPredicted RBP1.67□□□□□ -2.14
HMGB1-204ENST00000399489 VPS13DQ5THJ4 4388 aa1.67□□□□□ -2.14
HMGB1-204ENST00000399489 DNAH11Q96DT5 4516 aa1.66□□□□□ -2.14
HMGB1-204ENST00000399489 C6orf48Q9UBA6 75 aa1.66□□□□□ -2.14
HMGB1-204ENST00000399489 HECTD4Q9Y4D8 3996 aa1.66□□□□□ -2.14
HMGB1-204ENST00000399489 KMT2AQ03164 3969 aa1.66□□□□□ -2.14
HMGB1-204ENST00000399489 DNAH2Q9P225 4427 aa1.65□□□□□ -2.14
HMGB1-204ENST00000399489 PKHD1P08F94 4074 aa1.65□□□□□ -2.15
HMGB1-204ENST00000399489 FAT2Q9NYQ8 4349 aa1.65□□□□□ -2.15
HMGB1-204ENST00000399489 HSPG2P98160 4391 aa1.64□□□□□ -2.15
HMGB1-204ENST00000399489 H0YAA0 97 aa1.64□□□□□ -2.15
HMGB1-204ENST00000399489 K7EIL1 84 aa1.64□□□□□ -2.15
HMGB1-204ENST00000399489 DEFB108BQ8NET1 73 aa1.64□□□□□ -2.15
HMGB1-204ENST00000399489 ARHGAP5-AS1Q96IT6 56 aa1.64□□□□□ -2.15
HMGB1-204ENST00000399489 SORL1Q92673 2214 aa1.63□□□□□ -2.15
HMGB1-204ENST00000399489 ALMS1Q8TCU4 4167 aa1.63□□□□□ -2.15
HMGB1-204ENST00000399489 WNK2Q9Y3S1 2297 aa1.63□□□□□ -2.15
HMGB1-204ENST00000399489 COX6A2Q02221 97 aa1.63□□□□□ -2.15
HMGB1-204ENST00000399489 KRTAP13-1Q8IUC0 172 aa1.62□□□□□ -2.15
HMGB1-204ENST00000399489 LRP1BQ9NZR2 4599 aa1.61□□□□□ -2.15
HMGB1-204ENST00000399489 HMCN2Q8NDA2 5059 aa1.61□□□□□ -2.15
HMGB1-204ENST00000399489 KRTAP4-1Q9BYQ7 146 aa1.61□□□□□ -2.15
HMGB1-204ENST00000399489 C10orf95Q9H7T3 257 aa1.6□□□□□ -2.15
HMGB1-204ENST00000399489 PRO0255Q9UI72 69 aa1.6□□□□□ -2.15
HMGB1-204ENST00000399489 APOBP04114 4563 aaKnown RBP1.6□□□□□ -2.15
HMGB1-204ENST00000399489 FAT1Q14517 4588 aa1.59□□□□□ -2.15
HMGB1-204ENST00000399489 RPS27LQ71UM5 84 aaKnown RBP1.59□□□□□ -2.16
HMGB1-204ENST00000399489 WFDC13Q8IUB5 93 aa1.59□□□□□ -2.16
HMGB1-204ENST00000399489 DNAH5Q8TE73 4624 aa1.59□□□□□ -2.16
HMGB1-204ENST00000399489 MYCBP2O75592 4640 aa1.59□□□□□ -2.16
HMGB1-204ENST00000399489 KRTAP12-4P60329 112 aa1.58□□□□□ -2.16
HMGB1-204ENST00000399489 LELP1Q5T871 98 aa1.58□□□□□ -2.16
HMGB1-204ENST00000399489 Q6ZSA8 131 aa1.58□□□□□ -2.16
HMGB1-204ENST00000399489 WFDC10BQ8IUB3 73 aa1.58□□□□□ -2.16
HMGB1-204ENST00000399489 TTTY10Q9BZA0 68 aa1.58□□□□□ -2.16
HMGB1-204ENST00000399489 DNAH17Q9UFH2 4485 aa1.58□□□□□ -2.16
HMGB1-204ENST00000399489 POLR2KP53803 58 aaKnown RBP1.57□□□□□ -2.16
HMGB1-204ENST00000399489 CRCT1Q9UGL9 99 aa1.57□□□□□ -2.16
HMGB1-204ENST00000399489 APLNQ9ULZ1 77 aa1.57□□□□□ -2.16
HMGB1-204ENST00000399489 PKD1P98161 4303 aa1.56□□□□□ -2.16
HMGB1-204ENST00000399489 DNAH6Q9C0G6 4158 aa1.56□□□□□ -2.16
HMGB1-204ENST00000399489 RPS27P42677 84 aaKnown RBP1.56□□□□□ -2.16
HMGB1-204ENST00000399489 H1FX-AS1Q4G0G2 97 aa1.56□□□□□ -2.16
HMGB1-204ENST00000399489 IGLV5-48A0A075B6I7 105 aa1.55□□□□□ -2.16
HMGB1-204ENST00000399489 DEFB130BP0DP73 79 aa1.55□□□□□ -2.16
HMGB1-204ENST00000399489 DEFB130AP0DP74 79 aa1.55□□□□□ -2.16
HMGB1-204ENST00000399489 RPL39P62891 51 aaKnown RBP1.55□□□□□ -2.16
HMGB1-204ENST00000399489 RNF213Q63HN8 5207 aa1.55□□□□□ -2.16
HMGB1-204ENST00000399489 LINC01590Q5TEZ4 76 aa1.54□□□□□ -2.16
HMGB1-204ENST00000399489 DMBT1Q9UGM3 2413 aaPredicted RBP1.54□□□□□ -2.16
HMGB1-204ENST00000399489 SPRR1AP35321 89 aa1.54□□□□□ -2.16
HMGB1-204ENST00000399489 KAAG1Q9UBP8 84 aa1.54□□□□□ -2.16
HMGB1-204ENST00000399489 H3BUX3 64 aa1.53□□□□□ -2.16
HMGB1-204ENST00000399489 DEFB105AQ8NG35 78 aa1.53□□□□□ -2.16
HMGB1-204ENST00000399489 SPINK9Q5DT21 86 aa1.52□□□□□ -2.17
HMGB1-204ENST00000399489 Q5VSD8 79 aa1.52□□□□□ -2.17
HMGB1-204ENST00000399489 RPL39LQ96EH5 51 aaKnown RBP1.52□□□□□ -2.17
HMGB1-204ENST00000399489 LRP2P98164 4655 aa1.51□□□□□ -2.17
HMGB1-204ENST00000399489 KRTAP12-3P60328 96 aa1.51□□□□□ -2.17
HMGB1-204ENST00000399489 H3BSH0 61 aa1.5□□□□□ -2.17
HMGB1-204ENST00000399489 DEFB131AP59861 70 aa1.5□□□□□ -2.17
HMGB1-204ENST00000399489 WT1-ASQ06250 92 aa1.5□□□□□ -2.17
HMGB1-204ENST00000399489 LRP1Q07954 4544 aaKnown RBP1.49□□□□□ -2.17
HMGB1-204ENST00000399489 MUC5BQ9HC84 5762 aaPredicted RBP1.49□□□□□ -2.17
HMGB1-204ENST00000399489 VPS13BQ7Z7G8 4022 aa1.49□□□□□ -2.17
HMGB1-204ENST00000399489 H3BUA1 57 aa1.49□□□□□ -2.17
HMGB1-204ENST00000399489 DEFB136Q30KP8 78 aa1.49□□□□□ -2.17
HMGB1-204ENST00000399489 SRRM2Q9UQ35 2752 aaKnown RBP1.48□□□□□ -2.17
HMGB1-204ENST00000399489 SPRR1BP22528 89 aa1.48□□□□□ -2.17
HMGB1-204ENST00000399489 FAT4Q6V0I7 4981 aa1.48□□□□□ -2.17
HMGB1-204ENST00000399489 MUC2Q02817 5179 aa1.47□□□□□ -2.17
HMGB1-204ENST00000399489 LEAP2Q969E1 77 aa1.47□□□□□ -2.17
HMGB1-204ENST00000399489 FAT3Q8TDW7 4589 aa1.47□□□□□ -2.17
HMGB1-204ENST00000399489 MMP24-AS1A0A0U1RRL7 71 aa1.46□□□□□ -2.18
HMGB1-204ENST00000399489 KLK9Q2XQG4 91 aa1.45□□□□□ -2.18
HMGB1-204ENST00000399489 FSIP2Q5CZC0 6907 aa1.45□□□□□ -2.18
HMGB1-204ENST00000399489 PRLHP81277 87 aa1.44□□□□□ -2.18
HMGB1-204ENST00000399489 PRCDQ00LT1 54 aa1.44□□□□□ -2.18
HMGB1-204ENST00000399489 PKHD1L1Q86WI1 4243 aa1.44□□□□□ -2.18
HMGB1-204ENST00000399489 DNAH8Q96JB1 4490 aa1.44□□□□□ -2.18
HMGB1-204ENST00000399489 TNXBP22105 4242 aa1.43□□□□□ -2.18
HMGB1-204ENST00000399489 M0QY20 66 aa1.42□□□□□ -2.18
HMGB1-204ENST00000399489 A0A0D9SG42 100 aa1.41□□□□□ -2.18
HMGB1-204ENST00000399489 S4R3F8 94 aa1.41□□□□□ -2.18
HMGB1-204ENST00000399489 KRTAP10-4P60372 401 aaPredicted RBP1.4□□□□□ -2.18
HMGB1-204ENST00000399489 DEFB4AO15263 64 aa1.4□□□□□ -2.19
HMGB1-204ENST00000399489 DEFB135Q30KP9 77 aa1.4□□□□□ -2.19
HMGB1-204ENST00000399489 TOMM7Q9P0U1 55 aa1.39□□□□□ -2.19
HMGB1-204ENST00000399489 LPAP08519 4548 aa1.39□□□□□ -2.19
HMGB1-204ENST00000399489 SMR3BP02814 79 aaPredicted RBP1.38□□□□□ -2.19
HMGB1-204ENST00000399489 A8MTW9 85 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms