RNA–Protein interactions for RNA: ENST00000395878.7

UBFD1-201, Transcript of ubiquitin family domain containing 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene UBFD1, Length 5,110 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-201ENST00000395878 VPS13CQ709C8 3753 aa7.32□□□□□ -1.24
UBFD1-201ENST00000395878 CSMD3Q7Z407 3707 aa7.31□□□□□ -1.24
UBFD1-201ENST00000395878 DNAH5Q8TE73 4624 aa7.15□□□□□ -1.27
UBFD1-201ENST00000395878 DNAH9Q9NYC9 4486 aa7.1□□□□□ -1.27
UBFD1-201ENST00000395878 DNAH10Q8IVF4 4471 aa7.06□□□□□ -1.28
UBFD1-201ENST00000395878 KRTAP8-1Q8IUC2 63 aa7.06□□□□□ -1.28
UBFD1-201ENST00000395878 PLECQ15149 4684 aaKnown RBP7.01□□□□□ -1.29
UBFD1-201ENST00000395878 DNAH2Q9P225 4427 aa7□□□□□ -1.29
UBFD1-201ENST00000395878 KRTAP4-1Q9BYQ7 146 aa7□□□□□ -1.29
UBFD1-201ENST00000395878 DNAH1Q9P2D7 4330 aa6.97□□□□□ -1.29
UBFD1-201ENST00000395878 KRTAP10-5P60370 271 aa6.97□□□□□ -1.29
UBFD1-201ENST00000395878 DNAH11Q96DT5 4516 aa6.96□□□□□ -1.29
UBFD1-201ENST00000395878 MT1HP80294 61 aa6.93□□□□□ -1.3
UBFD1-201ENST00000395878 SPRR2GQ9BYE4 73 aa6.89□□□□□ -1.31
UBFD1-201ENST00000395878 MT2AP02795 61 aa6.87□□□□□ -1.31
UBFD1-201ENST00000395878 DNAH17Q9UFH2 4485 aa6.85□□□□□ -1.31
UBFD1-201ENST00000395878 ZNF469Q96JG9 3925 aaPredicted RBP6.85□□□□□ -1.31
UBFD1-201ENST00000395878 DNHD1Q96M86 4753 aa6.84□□□□□ -1.31
UBFD1-201ENST00000395878 VPS13DQ5THJ4 4388 aa6.79□□□□□ -1.32
UBFD1-201ENST00000395878 AKAP9Q99996 3911 aa6.79□□□□□ -1.32
UBFD1-201ENST00000395878 FAT1Q14517 4588 aa6.78□□□□□ -1.32
UBFD1-201ENST00000395878 DYNC1H1Q14204 4646 aaKnown RBP6.75□□□□□ -1.33
UBFD1-201ENST00000395878 MT1FP04733 61 aa6.7□□□□□ -1.34
UBFD1-201ENST00000395878 LRP1BQ9NZR2 4599 aa6.66□□□□□ -1.34
UBFD1-201ENST00000395878 SACSQ9NZJ4 4579 aa6.64□□□□□ -1.35
UBFD1-201ENST00000395878 KRTAP19-5Q3LI72 72 aa6.62□□□□□ -1.35
UBFD1-201ENST00000395878 DNAH8Q96JB1 4490 aa6.6□□□□□ -1.35
UBFD1-201ENST00000395878 RYR1P21817 5038 aa6.58□□□□□ -1.36
UBFD1-201ENST00000395878 LCE3CQ5T5A8 94 aa6.57□□□□□ -1.36
UBFD1-201ENST00000395878 DYNC2H1Q8NCM8 4307 aaKnown RBP6.56□□□□□ -1.36
UBFD1-201ENST00000395878 KRTAP19-4Q3LI73 84 aa6.55□□□□□ -1.36
UBFD1-201ENST00000395878 FAT2Q9NYQ8 4349 aa6.55□□□□□ -1.36
UBFD1-201ENST00000395878 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
UBFD1-201ENST00000395878 SPRR2FQ96RM1 72 aa6.52□□□□□ -1.37
UBFD1-201ENST00000395878 DNAH3Q8TD57 4116 aa6.5□□□□□ -1.37
UBFD1-201ENST00000395878 STARD9Q9P2P6 4700 aa6.48□□□□□ -1.37
UBFD1-201ENST00000395878 APOBP04114 4563 aaKnown RBP6.46□□□□□ -1.38
UBFD1-201ENST00000395878 KRTAP19-8Q3LI54 63 aa6.39□□□□□ -1.39
UBFD1-201ENST00000395878 KRTAP19-1Q8IUB9 90 aa6.34□□□□□ -1.39
UBFD1-201ENST00000395878 RYR3Q15413 4870 aa6.28□□□□□ -1.4
UBFD1-201ENST00000395878 ANK2Q01484 3957 aa6.27□□□□□ -1.41
UBFD1-201ENST00000395878 PRKDCP78527 4128 aaKnown RBP6.26□□□□□ -1.41
UBFD1-201ENST00000395878 LRP1Q07954 4544 aaKnown RBP6.24□□□□□ -1.41
UBFD1-201ENST00000395878 VPS13BQ7Z7G8 4022 aa6.22□□□□□ -1.41
UBFD1-201ENST00000395878 MYCBP2O75592 4640 aa6.21□□□□□ -1.42
UBFD1-201ENST00000395878 FAT3Q8TDW7 4589 aa6.21□□□□□ -1.42
UBFD1-201ENST00000395878 MT1XP80297 61 aa6.2□□□□□ -1.42
UBFD1-201ENST00000395878 KIAA1109Q2LD37 5005 aa6.19□□□□□ -1.42
UBFD1-201ENST00000395878 KRTAP17-1Q9BYP8 105 aa6.14□□□□□ -1.43
UBFD1-201ENST00000395878 DNAH6Q9C0G6 4158 aa6.13□□□□□ -1.43
UBFD1-201ENST00000395878 RYR2Q92736 4967 aa6.12□□□□□ -1.43
UBFD1-201ENST00000395878 MT1BP07438 61 aa6.12□□□□□ -1.43
UBFD1-201ENST00000395878 KMT2AQ03164 3969 aa6.11□□□□□ -1.43
UBFD1-201ENST00000395878 SPRR2EP22531 72 aa6.09□□□□□ -1.43
UBFD1-201ENST00000395878 SPRR2BP35325 72 aa6.09□□□□□ -1.43
UBFD1-201ENST00000395878 SPRR2AP35326 72 aa6.09□□□□□ -1.43
UBFD1-201ENST00000395878 DNAH7Q8WXX0 4024 aa6.08□□□□□ -1.44
UBFD1-201ENST00000395878 FRAS1Q86XX4 4008 aa6.08□□□□□ -1.44
UBFD1-201ENST00000395878 HERC1Q15751 4861 aa6.08□□□□□ -1.44
UBFD1-201ENST00000395878 LYSTQ99698 3801 aa6.08□□□□□ -1.44
UBFD1-201ENST00000395878 KRTAP9-8Q9BYQ0 159 aa6.06□□□□□ -1.44
UBFD1-201ENST00000395878 LCE3BQ5TA77 95 aa6.03□□□□□ -1.44
UBFD1-201ENST00000395878 CMYA5Q8N3K9 4069 aa6.02□□□□□ -1.45
UBFD1-201ENST00000395878 SPRR5A0A1B0GTR4 108 aa6□□□□□ -1.45
UBFD1-201ENST00000395878 MT1GP13640 62 aa6□□□□□ -1.45
UBFD1-201ENST00000395878 HSPG2P98160 4391 aa5.97□□□□□ -1.45
UBFD1-201ENST00000395878 KRTAP12-4P60329 112 aa5.95□□□□□ -1.46
UBFD1-201ENST00000395878 KRTAP9-3Q9BYQ3 159 aa5.94□□□□□ -1.46
UBFD1-201ENST00000395878 LCE2CQ5TA81 110 aa5.92□□□□□ -1.46
UBFD1-201ENST00000395878 KRTAP4-8A0A0G2JLE6 195 aa5.91□□□□□ -1.46
UBFD1-201ENST00000395878 KRTAP4-8Q9BYQ9 185 aa5.91□□□□□ -1.46
UBFD1-201ENST00000395878 LCE2BO14633 110 aa5.9□□□□□ -1.47
UBFD1-201ENST00000395878 SPRR2DP22532 72 aa5.9□□□□□ -1.47
UBFD1-201ENST00000395878 PKD1P98161 4303 aa5.87□□□□□ -1.47
UBFD1-201ENST00000395878 HERC2O95714 4834 aa5.85□□□□□ -1.47
UBFD1-201ENST00000395878 BIRC6Q9NR09 4857 aa5.84□□□□□ -1.48
UBFD1-201ENST00000395878 HECTD4Q9Y4D8 3996 aa5.83□□□□□ -1.48
UBFD1-201ENST00000395878 LCE3DQ9BYE3 92 aa5.77□□□□□ -1.49
UBFD1-201ENST00000395878 PCLOQ9Y6V0 5065 aa5.71□□□□□ -1.49
UBFD1-201ENST00000395878 KRTAP19-3Q7Z4W3 81 aa5.7□□□□□ -1.5
UBFD1-201ENST00000395878 LRP2P98164 4655 aa5.69□□□□□ -1.5
UBFD1-201ENST00000395878 LCE3EQ5T5B0 92 aa5.69□□□□□ -1.5
UBFD1-201ENST00000395878 HYDINQ4G0P3 5121 aa5.67□□□□□ -1.5
UBFD1-201ENST00000395878 PKHD1L1Q86WI1 4243 aa5.67□□□□□ -1.5
UBFD1-201ENST00000395878 MT1LQ93083 61 aa5.65□□□□□ -1.5
UBFD1-201ENST00000395878 KRTAP19-2Q3LHN2 52 aa5.62□□□□□ -1.51
UBFD1-201ENST00000395878 MT1EP04732 61 aa5.61□□□□□ -1.51
UBFD1-201ENST00000395878 KRTAP4-7Q9BYR0 210 aa5.57□□□□□ -1.52
UBFD1-201ENST00000395878 MUC17Q685J3 4493 aa5.48□□□□□ -1.53
UBFD1-201ENST00000395878 KMT2CQ8NEZ4 4911 aaKnown RBP5.47□□□□□ -1.53
UBFD1-201ENST00000395878 PKHD1P08F94 4074 aa5.45□□□□□ -1.54
UBFD1-201ENST00000395878 LPAP08519 4548 aa5.45□□□□□ -1.54
UBFD1-201ENST00000395878 MT1MQ8N339 61 aa5.43□□□□□ -1.54
UBFD1-201ENST00000395878 EPPK1P58107 5090 aaKnown RBP5.43□□□□□ -1.54
UBFD1-201ENST00000395878 FLGP20930 4061 aaPredicted RBP5.42□□□□□ -1.54
UBFD1-201ENST00000395878 LCE2DQ5TA82 110 aaPredicted RBP5.39□□□□□ -1.55
UBFD1-201ENST00000395878 KRTAP19-6Q3LI70 58 aa5.38□□□□□ -1.55
UBFD1-201ENST00000395878 MT3P25713 68 aa5.37□□□□□ -1.55
UBFD1-201ENST00000395878 TNXBP22105 4242 aa5.33□□□□□ -1.56
UBFD1-201ENST00000395878 ABCA13Q86UQ4 5058 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms