RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SPANXA1Q9NS26 97 aa-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 GSTK1Q9Y2Q3 226 aa-2.73□□□□□ -2.85
RNU6-540P-201ENST00000384622 H3BVH4 76 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 TIMM8AO60220 97 aaPredicted RBP-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 SRP9P49458 86 aaKnown RBP-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 GNG10P50151 68 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 GNG11P61952 73 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 HMGN5P82970 282 aaKnown RBP-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 ZNF720Q7Z2F6 126 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 CROCCP2Q86T23 111 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 RERGLQ9H628 205 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 COMMD10Q9Y6G5 202 aa-2.74□□□□□ -2.85
RNU6-540P-201ENST00000384622 IQCF5A8MTL0 148 aa-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 K7EIM0 57 aa-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 K7EMI3 77 aa-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 S100A6P06703 90 aa-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 RPL39P62891 51 aaKnown RBP-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 PPP1R7Q15435 360 aa-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 CCDC152Q4G0S7 254 aa-2.75□□□□□ -2.85
RNU6-540P-201ENST00000384622 MYMXA0A1B0GTQ4 84 aa-2.76□□□□□ -2.85
RNU6-540P-201ENST00000384622 PVALEFA0A1B0GWK0 134 aa-2.76□□□□□ -2.85
RNU6-540P-201ENST00000384622 MED31Q9Y3C7 131 aa-2.76□□□□□ -2.85
RNU6-540P-201ENST00000384622 A0A1B0GV50 99 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 CXCL11O14625 94 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 BANF1O75531 89 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 S100A1P23297 94 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 BCAP31P51572 246 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 ARHGAP5-AS1Q96IT6 56 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 PFDN5Q99471 154 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 GID8Q9NWU2 228 aa-2.77□□□□□ -2.85
RNU6-540P-201ENST00000384622 H0YGX0 51 aa-2.78□□□□□ -2.85
RNU6-540P-201ENST00000384622 PFDN6O15212 129 aa-2.78□□□□□ -2.85
RNU6-540P-201ENST00000384622 GGTA1PQ4G0N0 100 aa-2.78□□□□□ -2.85
RNU6-540P-201ENST00000384622 RPL39LQ96EH5 51 aaKnown RBP-2.78□□□□□ -2.85
RNU6-540P-201ENST00000384622 ST20Q9HBF5 79 aa-2.78□□□□□ -2.85
RNU6-540P-201ENST00000384622 MT-ND4LP03901 98 aa-2.79□□□□□ -2.86
RNU6-540P-201ENST00000384622 PAEPP09466 180 aa-2.79□□□□□ -2.86
RNU6-540P-201ENST00000384622 SERF2P84101 59 aa-2.79□□□□□ -2.86
RNU6-540P-201ENST00000384622 A0A1B0GW15 77 aa-2.8□□□□□ -2.86
RNU6-540P-201ENST00000384622 FABP7O15540 132 aa-2.8□□□□□ -2.86
RNU6-540P-201ENST00000384622 C12orf73Q69YU5 71 aa-2.8□□□□□ -2.86
RNU6-540P-201ENST00000384622 COPS9Q8WXC6 57 aa-2.8□□□□□ -2.86
RNU6-540P-201ENST00000384622 SMIM12Q96EX1 92 aa-2.8□□□□□ -2.86
RNU6-540P-201ENST00000384622 NKIRAS1Q9NYS0 192 aa-2.8□□□□□ -2.86
RNU6-540P-201ENST00000384622 SMIM24O75264 130 aa-2.81□□□□□ -2.86
RNU6-540P-201ENST00000384622 RPP14O95059 124 aaKnown RBP-2.81□□□□□ -2.86
RNU6-540P-201ENST00000384622 IER3IP1Q9Y5U9 82 aa-2.81□□□□□ -2.86
RNU6-540P-201ENST00000384622 TRBV2A0A0J9YWF9 115 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 RNF103-CHMP3A0A140T963 221 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 M0R129 80 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 PFDN1O60925 122 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 APOA2P02652 100 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 PLNP26678 52 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 CALML5Q9NZT1 146 aa-2.82□□□□□ -2.86
RNU6-540P-201ENST00000384622 CATR1Q13166 79 aa-2.83□□□□□ -2.86
RNU6-540P-201ENST00000384622 DNAL1Q4LDG9 190 aa-2.83□□□□□ -2.86
RNU6-540P-201ENST00000384622 CCDC42Q96M95 316 aa-2.83□□□□□ -2.86
RNU6-540P-201ENST00000384622 FGFR1OP2Q9NVK5 253 aa-2.83□□□□□ -2.86
RNU6-540P-201ENST00000384622 FAM240BA0A1B0GVZ2 78 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 SMIM30A4D0T7 59 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 CEBPZOSA8MTT3 80 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 GABARAPH6UMI1 98 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 SMIM15Q7Z3B0 74 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 CCDC12Q8WUD4 166 aaPredicted RBP-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 PPP3R2Q96LZ3 170 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 BANF2Q9H503 90 aa-2.84□□□□□ -2.86
RNU6-540P-201ENST00000384622 LYRM2Q9NU23 88 aaPredicted RBP-2.85□□□□□ -2.87
RNU6-540P-201ENST00000384622 HYPKQ9NX55 129 aa-2.85□□□□□ -2.87
RNU6-540P-201ENST00000384622 SNRPGP15A8MWD9 76 aa-2.86□□□□□ -2.87
RNU6-540P-201ENST00000384622 TNNC2P02585 160 aa-2.86□□□□□ -2.87
RNU6-540P-201ENST00000384622 ATP5EP2Q5VTU8 51 aa-2.86□□□□□ -2.87
RNU6-540P-201ENST00000384622 SMIM20Q8N5G0 67 aa-2.86□□□□□ -2.87
RNU6-540P-201ENST00000384622 CEP19Q96LK0 163 aa-2.86□□□□□ -2.87
RNU6-540P-201ENST00000384622 RIIAD1A6NNX1 92 aa-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 PVALBP20472 110 aaPredicted RBP-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 SMIM11AP58511 58 aa-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 SCGB2B2Q4G0G5 96 aa-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 RPL39P5Q59GN2 51 aa-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 C8orf59Q8N0T1 100 aaPredicted RBP-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 LSM10Q969L4 123 aaKnown RBP-2.87□□□□□ -2.87
RNU6-540P-201ENST00000384622 IGIPA6NJ69 53 aa-2.88□□□□□ -2.87
RNU6-540P-201ENST00000384622 TRPC5OSA6NMA1 111 aa-2.88□□□□□ -2.87
RNU6-540P-201ENST00000384622 CORTO00230 105 aa-2.88□□□□□ -2.87
RNU6-540P-201ENST00000384622 ATP5EP56381 51 aaPredicted RBP-2.88□□□□□ -2.87
RNU6-540P-201ENST00000384622 ATXN8Q156A1 80 aa-2.88□□□□□ -2.87
RNU6-540P-201ENST00000384622 S100A9P06702 114 aaKnown RBP-2.89□□□□□ -2.87
RNU6-540P-201ENST00000384622 NBEAP1P0C6P0 100 aa-2.89□□□□□ -2.87
RNU6-540P-201ENST00000384622 ATP6V1FQ16864 119 aa-2.89□□□□□ -2.87
RNU6-540P-201ENST00000384622 GCC2Q8IWJ2 1684 aa-2.89□□□□□ -2.87
RNU6-540P-201ENST00000384622 HSBP1O75506 76 aa-2.9□□□□□ -2.87
RNU6-540P-201ENST00000384622 PAIP2BQ9ULR5 123 aaKnown RBP-2.9□□□□□ -2.87
RNU6-540P-201ENST00000384622 HMGN1P05114 100 aa-2.91□□□□□ -2.88
RNU6-540P-201ENST00000384622 CTXN2P0C2S0 81 aa-2.91□□□□□ -2.88
RNU6-540P-201ENST00000384622 CCDC172P0C7W6 258 aa-2.91□□□□□ -2.88
RNU6-540P-201ENST00000384622 S100A11P31949 105 aa-2.91□□□□□ -2.88
RNU6-540P-201ENST00000384622 ETFRF1Q6IPR1 90 aa-2.91□□□□□ -2.88
RNU6-540P-201ENST00000384622 DNM1P34Q6PK57 102 aa-2.91□□□□□ -2.88
RNU6-540P-201ENST00000384622 TPM4P67936 248 aa-2.92□□□□□ -2.88
RNU6-540P-201ENST00000384622 TMEM244Q5VVB8 128 aa-2.92□□□□□ -2.88
RNU6-540P-201ENST00000384622 PAIP2Q9BPZ3 127 aaKnown RBP-2.92□□□□□ -2.88
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms