RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 INE1O15225 51 aa4.87□□□□□ -1.63
USP53-201ENST00000274030 DNAH5Q8TE73 4624 aa4.8□□□□□ -1.64
USP53-201ENST00000274030 KRTAP8-1Q8IUC2 63 aa4.73□□□□□ -1.65
USP53-201ENST00000274030 KRTAP10-5P60370 271 aa4.73□□□□□ -1.65
USP53-201ENST00000274030 DNAH9Q9NYC9 4486 aa4.73□□□□□ -1.65
USP53-201ENST00000274030 PLECQ15149 4684 aaKnown RBP4.72□□□□□ -1.65
USP53-201ENST00000274030 ALMS1Q8TCU4 4167 aa4.71□□□□□ -1.65
USP53-201ENST00000274030 KRTAP23-1A1A580 65 aa4.71□□□□□ -1.66
USP53-201ENST00000274030 KRTAP4-1Q9BYQ7 146 aa4.71□□□□□ -1.66
USP53-201ENST00000274030 DNAH11Q96DT5 4516 aa4.67□□□□□ -1.66
USP53-201ENST00000274030 DNAH1Q9P2D7 4330 aa4.66□□□□□ -1.66
USP53-201ENST00000274030 FAT1Q14517 4588 aa4.66□□□□□ -1.66
USP53-201ENST00000274030 AKAP9Q99996 3911 aa4.65□□□□□ -1.66
USP53-201ENST00000274030 DNAH10Q8IVF4 4471 aa4.64□□□□□ -1.67
USP53-201ENST00000274030 DNHD1Q96M86 4753 aa4.64□□□□□ -1.67
USP53-201ENST00000274030 MT1HP80294 61 aa4.61□□□□□ -1.67
USP53-201ENST00000274030 MT2AP02795 61 aa4.55□□□□□ -1.68
USP53-201ENST00000274030 DNAH8Q96JB1 4490 aa4.54□□□□□ -1.68
USP53-201ENST00000274030 RYR1P21817 5038 aa4.53□□□□□ -1.69
USP53-201ENST00000274030 DNAH2Q9P225 4427 aa4.52□□□□□ -1.69
USP53-201ENST00000274030 DYNC1H1Q14204 4646 aaKnown RBP4.5□□□□□ -1.69
USP53-201ENST00000274030 LRP1BQ9NZR2 4599 aa4.48□□□□□ -1.69
USP53-201ENST00000274030 MT1FP04733 61 aa4.48□□□□□ -1.69
USP53-201ENST00000274030 SPRR2GQ9BYE4 73 aa4.46□□□□□ -1.7
USP53-201ENST00000274030 DNAH17Q9UFH2 4485 aa4.44□□□□□ -1.7
USP53-201ENST00000274030 VPS13DQ5THJ4 4388 aa4.44□□□□□ -1.7
USP53-201ENST00000274030 SPRR2FQ96RM1 72 aa4.43□□□□□ -1.7
USP53-201ENST00000274030 SACSQ9NZJ4 4579 aa4.43□□□□□ -1.7
USP53-201ENST00000274030 KRTAP19-5Q3LI72 72 aa4.42□□□□□ -1.7
USP53-201ENST00000274030 STARD9Q9P2P6 4700 aa4.4□□□□□ -1.7
USP53-201ENST00000274030 VPS13BQ7Z7G8 4022 aa4.36□□□□□ -1.71
USP53-201ENST00000274030 FAT2Q9NYQ8 4349 aa4.35□□□□□ -1.71
USP53-201ENST00000274030 KRTAP10-7P60409 375 aaPredicted RBP4.35□□□□□ -1.71
USP53-201ENST00000274030 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
USP53-201ENST00000274030 MYCBP2O75592 4640 aa4.33□□□□□ -1.72
USP53-201ENST00000274030 LYSTQ99698 3801 aa4.33□□□□□ -1.72
USP53-201ENST00000274030 ANK2Q01484 3957 aa4.32□□□□□ -1.72
USP53-201ENST00000274030 LCE3CQ5T5A8 94 aa4.3□□□□□ -1.72
USP53-201ENST00000274030 KMT2AQ03164 3969 aa4.28□□□□□ -1.72
USP53-201ENST00000274030 PRKDCP78527 4128 aaKnown RBP4.28□□□□□ -1.72
USP53-201ENST00000274030 DYNC2H1Q8NCM8 4307 aaKnown RBP4.27□□□□□ -1.73
USP53-201ENST00000274030 DNAH3Q8TD57 4116 aa4.24□□□□□ -1.73
USP53-201ENST00000274030 KRTAP17-1Q9BYP8 105 aa4.22□□□□□ -1.73
USP53-201ENST00000274030 RYR3Q15413 4870 aa4.21□□□□□ -1.74
USP53-201ENST00000274030 FAT3Q8TDW7 4589 aa4.21□□□□□ -1.74
USP53-201ENST00000274030 KIAA1109Q2LD37 5005 aa4.2□□□□□ -1.74
USP53-201ENST00000274030 KRTAP19-1Q8IUB9 90 aa4.18□□□□□ -1.74
USP53-201ENST00000274030 LRP1Q07954 4544 aaKnown RBP4.15□□□□□ -1.75
USP53-201ENST00000274030 SPRR2EP22531 72 aa4.12□□□□□ -1.75
USP53-201ENST00000274030 SPRR2BP35325 72 aa4.12□□□□□ -1.75
USP53-201ENST00000274030 SPRR2AP35326 72 aa4.12□□□□□ -1.75
USP53-201ENST00000274030 FRAS1Q86XX4 4008 aa4.12□□□□□ -1.75
USP53-201ENST00000274030 LCE3BQ5TA77 95 aa4.11□□□□□ -1.75
USP53-201ENST00000274030 KRTAP19-8Q3LI54 63 aa4.1□□□□□ -1.75
USP53-201ENST00000274030 MT1XP80297 61 aa4.09□□□□□ -1.76
USP53-201ENST00000274030 MT1GP13640 62 aa4.07□□□□□ -1.76
USP53-201ENST00000274030 KRTAP4-8A0A0G2JLE6 195 aa4.06□□□□□ -1.76
USP53-201ENST00000274030 KRTAP4-8Q9BYQ9 185 aa4.06□□□□□ -1.76
USP53-201ENST00000274030 DNAH6Q9C0G6 4158 aa4.05□□□□□ -1.76
USP53-201ENST00000274030 MT1BP07438 61 aa4.03□□□□□ -1.76
USP53-201ENST00000274030 DNAH7Q8WXX0 4024 aa4.03□□□□□ -1.77
USP53-201ENST00000274030 CMYA5Q8N3K9 4069 aa4.01□□□□□ -1.77
USP53-201ENST00000274030 KRTAP9-8Q9BYQ0 159 aa4.01□□□□□ -1.77
USP53-201ENST00000274030 LRP2P98164 4655 aa3.99□□□□□ -1.77
USP53-201ENST00000274030 KRTAP19-4Q3LI73 84 aa3.98□□□□□ -1.77
USP53-201ENST00000274030 KRTAP12-4P60329 112 aa3.97□□□□□ -1.77
USP53-201ENST00000274030 SPRR2DP22532 72 aa3.97□□□□□ -1.77
USP53-201ENST00000274030 HERC2O95714 4834 aa3.96□□□□□ -1.78
USP53-201ENST00000274030 RYR2Q92736 4967 aa3.95□□□□□ -1.78
USP53-201ENST00000274030 LCE2BO14633 110 aa3.94□□□□□ -1.78
USP53-201ENST00000274030 HYDINQ4G0P3 5121 aa3.93□□□□□ -1.78
USP53-201ENST00000274030 LCE2CQ5TA81 110 aa3.91□□□□□ -1.78
USP53-201ENST00000274030 KRTAP9-3Q9BYQ3 159 aa3.91□□□□□ -1.78
USP53-201ENST00000274030 PCLOQ9Y6V0 5065 aa3.9□□□□□ -1.78
USP53-201ENST00000274030 HECTD4Q9Y4D8 3996 aa3.9□□□□□ -1.79
USP53-201ENST00000274030 PKD1P98161 4303 aa3.89□□□□□ -1.79
USP53-201ENST00000274030 PKHD1P08F94 4074 aa3.88□□□□□ -1.79
USP53-201ENST00000274030 LPAP08519 4548 aa3.87□□□□□ -1.79
USP53-201ENST00000274030 KRTAP4-7Q9BYR0 210 aa3.85□□□□□ -1.79
USP53-201ENST00000274030 HSPG2P98160 4391 aa3.84□□□□□ -1.8
USP53-201ENST00000274030 LCE3DQ9BYE3 92 aa3.81□□□□□ -1.8
USP53-201ENST00000274030 KMT2CQ8NEZ4 4911 aaKnown RBP3.78□□□□□ -1.8
USP53-201ENST00000274030 EPPK1P58107 5090 aaKnown RBP3.77□□□□□ -1.81
USP53-201ENST00000274030 HERC1Q15751 4861 aa3.77□□□□□ -1.81
USP53-201ENST00000274030 SPRR5A0A1B0GTR4 108 aa3.76□□□□□ -1.81
USP53-201ENST00000274030 SYNE1Q8NF91 8797 aaKnown RBP3.76□□□□□ -1.81
USP53-201ENST00000274030 BIRC6Q9NR09 4857 aa3.75□□□□□ -1.81
USP53-201ENST00000274030 KRTAP19-3Q7Z4W3 81 aa3.74□□□□□ -1.81
USP53-201ENST00000274030 LCE3EQ5T5B0 92 aa3.73□□□□□ -1.81
USP53-201ENST00000274030 MT1LQ93083 61 aa3.71□□□□□ -1.82
USP53-201ENST00000274030 FSIP2Q5CZC0 6907 aa3.69□□□□□ -1.82
USP53-201ENST00000274030 MT1EP04732 61 aa3.67□□□□□ -1.82
USP53-201ENST00000274030 KRTAP19-2Q3LHN2 52 aa3.67□□□□□ -1.82
USP53-201ENST00000274030 PKHD1L1Q86WI1 4243 aa3.67□□□□□ -1.82
USP53-201ENST00000274030 LCE2DQ5TA82 110 aaPredicted RBP3.65□□□□□ -1.82
USP53-201ENST00000274030 LOC100996750A0A140TA64 210 aa3.62□□□□□ -1.83
USP53-201ENST00000274030 MT4P47944 62 aa3.61□□□□□ -1.83
USP53-201ENST00000274030 ABCA13Q86UQ4 5058 aa3.6□□□□□ -1.83
USP53-201ENST00000274030 KRTAP4-3Q9BYR4 195 aa3.6□□□□□ -1.83
USP53-201ENST00000274030 MUC17Q685J3 4493 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms