RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 IGHV3-30P01768 117 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 IGHV3-30-5P0DP03 117 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 C1orf137Q5JT78 98 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 GDF5OSQ5U4N7 250 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 ZNF833PQ6ZTB9 187 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 COX7B2Q8TF08 81 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 UBL5Q9BZL1 73 aa1.39□□□□□ -2.19
VPS4B-203ENST00000588323 TRAV21A0A0B4J279 112 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 A0A0J9YY99 117 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 RNASE3P12724 160 aaKnown RBP1.38□□□□□ -2.19
VPS4B-203ENST00000588323 CAV3P56539 151 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 Q86TA4 180 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 AMELXQ99217 191 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 WFDC10AQ9H1F0 79 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 KAAG1Q9UBP8 84 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 TIMM8BQ9Y5J9 83 aaPredicted RBP1.38□□□□□ -2.19
VPS4B-203ENST00000588323 PKD1P98161 4303 aa1.38□□□□□ -2.19
VPS4B-203ENST00000588323 A0A087WVE0 104 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 TRAV1-2A0A0B4J238 106 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 M0R135 149 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 M0R1W7 72 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 UQCR11O14957 56 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 PPYP01298 95 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 MGPP08493 103 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 PLNP26678 52 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 SNRPGP62308 76 aaKnown RBP1.37□□□□□ -2.19
VPS4B-203ENST00000588323 CNBPP62633 177 aaKnown RBP1.37□□□□□ -2.19
VPS4B-203ENST00000588323 SERF2P84101 59 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 PDE6HQ13956 83 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 C10orf99Q6UWK7 81 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 LINC00322Q6ZN03 302 aaPredicted RBP1.37□□□□□ -2.19
VPS4B-203ENST00000588323 ZNF563Q8TA94 476 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 V9GYV3 84 aa1.37□□□□□ -2.19
VPS4B-203ENST00000588323 JMJD7-PLA2G4BH0Y9G9 81 aa1.36□□□□□ -2.19
VPS4B-203ENST00000588323 SPINK4O60575 86 aa1.36□□□□□ -2.19
VPS4B-203ENST00000588323 NREPQ16612 68 aa1.36□□□□□ -2.19
VPS4B-203ENST00000588323 ENHOQ6UWT2 76 aa1.36□□□□□ -2.19
VPS4B-203ENST00000588323 KLK9Q9UKQ9 250 aa1.36□□□□□ -2.19
VPS4B-203ENST00000588323 LINC01558Q9Y6Z2 57 aa1.36□□□□□ -2.19
VPS4B-203ENST00000588323 TNCP24821 2201 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 IGKV3-7A0A075B6H7 116 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 TRBV7-4A0A0J9YYF1 115 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 CCL3L1P16619 93 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 FXYD6P3P58550 94 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 LRP2P98164 4655 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 C10orf113Q5VZT2 155 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 LINC00208Q96KT6 92 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 GAFA1Q96PS6 74 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 TMEM14CQ9P0S9 112 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 PKHD1L1Q86WI1 4243 aa1.35□□□□□ -2.19
VPS4B-203ENST00000588323 FAT1Q14517 4588 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 SMIM27A0A1W2PRY6 76 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 H0Y9P7 68 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 K7EMI3 77 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 PRB3Q04118 309 aaPredicted RBP1.34□□□□□ -2.19
VPS4B-203ENST00000588323 COX17Q14061 63 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 DEFB136Q30KP8 78 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 MINOS1Q5TGZ0 78 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 COA5Q86WW8 74 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 TMEM263Q8WUH6 116 aaKnown RBP1.34□□□□□ -2.19
VPS4B-203ENST00000588323 LINC00846Q9NV44 126 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 APLNQ9ULZ1 77 aa1.34□□□□□ -2.19
VPS4B-203ENST00000588323 TRBV6-4A0A1B0GX49 114 aa1.33□□□□□ -2.2
VPS4B-203ENST00000588323 H3BSH0 61 aa1.33□□□□□ -2.2
VPS4B-203ENST00000588323 PDE6GP18545 87 aa1.33□□□□□ -2.2
VPS4B-203ENST00000588323 CCL18P55774 89 aa1.33□□□□□ -2.2
VPS4B-203ENST00000588323 Q5VSD8 79 aa1.33□□□□□ -2.2
VPS4B-203ENST00000588323 KRTAP26-1Q6PEX3 210 aa1.33□□□□□ -2.2
VPS4B-203ENST00000588323 TRBV6-1A0A0K0K1D8 114 aa1.32□□□□□ -2.2
VPS4B-203ENST00000588323 ARL14EPLP0DKL9 152 aa1.32□□□□□ -2.2
VPS4B-203ENST00000588323 FXYD4P59646 89 aa1.32□□□□□ -2.2
VPS4B-203ENST00000588323 HAMPP81172 84 aa1.32□□□□□ -2.2
VPS4B-203ENST00000588323 Q6ZRN7 208 aaPredicted RBP1.32□□□□□ -2.2
VPS4B-203ENST00000588323 FSIP2Q5CZC0 6907 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 IGKV2-40A0A087WW87 121 aaPredicted RBP1.31□□□□□ -2.2
VPS4B-203ENST00000588323 M0R2N4 97 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 NDUFA3O95167 84 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 IGKV2D-40P01614 121 aaPredicted RBP1.31□□□□□ -2.2
VPS4B-203ENST00000588323 IGLV3-1P01715 115 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 ACYP2P14621 99 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 RPL37AP61513 92 aaKnown RBP1.31□□□□□ -2.2
VPS4B-203ENST00000588323 C10orf55Q5SWW7 151 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 RPS27LQ71UM5 84 aaKnown RBP1.31□□□□□ -2.2
VPS4B-203ENST00000588323 C5orf56Q8N8D9 126 aa1.31□□□□□ -2.2
VPS4B-203ENST00000588323 TRGV2A0A075B6R0 118 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 TRGV1A0A0A0MS02 117 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 IGKV3OR2-268A0A0C4DH90 116 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 A0A1B0GU69 56 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 IGKV2-29A2NJV5 120 aaPredicted RBP1.3□□□□□ -2.2
VPS4B-203ENST00000588323 H0YGX0 51 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 I3L3M4 83 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 ZNF137PP52743 207 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 SPINK7P58062 85 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 RPL38P63173 70 aaKnown RBP1.3□□□□□ -2.2
VPS4B-203ENST00000588323 FXYD3Q14802 87 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 SPATA8Q6RVD6 105 aa1.3□□□□□ -2.2
VPS4B-203ENST00000588323 ZCCHC13Q8WW36 166 aaKnown RBP1.3□□□□□ -2.2
VPS4B-203ENST00000588323 TNXBP22105 4242 aa1.29□□□□□ -2.2
VPS4B-203ENST00000588323 LRP1Q07954 4544 aaKnown RBP1.29□□□□□ -2.2
VPS4B-203ENST00000588323 FAT3Q8TDW7 4589 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms