RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 LEPROTL1O95214 131 aa3.55□□□□□ -1.84
VPS53-212ENST00000572259 HIGD2AQ9BW72 106 aa3.55□□□□□ -1.84
VPS53-212ENST00000572259 COX17Q14061 63 aa3.54□□□□□ -1.84
VPS53-212ENST00000572259 SPINK6Q6UWN8 80 aa3.54□□□□□ -1.84
VPS53-212ENST00000572259 FAM19A2Q8N3H0 131 aa3.54□□□□□ -1.84
VPS53-212ENST00000572259 C20orf166-AS1Q96NR2 134 aa3.54□□□□□ -1.84
VPS53-212ENST00000572259 MYCBP2O75592 4640 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 A0A087WSZ3 146 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 LOC107984156A0A0G2JMH3 177 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 SNCGO76070 127 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 PLNP26678 52 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 KRTAP10-4P60372 401 aaPredicted RBP3.53□□□□□ -1.84
VPS53-212ENST00000572259 LINC00483Q53H64 154 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 C1orf137Q5JT78 98 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 ARL17AQ8IVW1 177 aa3.53□□□□□ -1.84
VPS53-212ENST00000572259 NUPR1O60356 82 aa3.52□□□□□ -1.85
VPS53-212ENST00000572259 PSORS1C2Q9UIG4 136 aa3.52□□□□□ -1.85
VPS53-212ENST00000572259 C22orf24Q9Y442 160 aa3.52□□□□□ -1.85
VPS53-212ENST00000572259 PKHD1L1Q86WI1 4243 aa3.52□□□□□ -1.85
VPS53-212ENST00000572259 MYMXA0A1B0GTQ4 84 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 A8MU10 97 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 MT-ATP8P03928 68 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 KRTAP1-4P0C5Y4 121 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 COX7CP15954 63 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 LINC00158P58513 81 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 DSCR8Q96T75 97 aa3.51□□□□□ -1.85
VPS53-212ENST00000572259 IGKCP01834 107 aa3.5□□□□□ -1.85
VPS53-212ENST00000572259 ATP5EP56381 51 aaPredicted RBP3.5□□□□□ -1.85
VPS53-212ENST00000572259 ZNF625Q96I27 306 aaPredicted RBP3.5□□□□□ -1.85
VPS53-212ENST00000572259 FAT3Q8TDW7 4589 aa3.49□□□□□ -1.85
VPS53-212ENST00000572259 LRP1Q07954 4544 aaKnown RBP3.49□□□□□ -1.85
VPS53-212ENST00000572259 TMEM254Q8TBM7 123 aa3.49□□□□□ -1.85
VPS53-212ENST00000572259 LINC01600Q96MT4 127 aa3.49□□□□□ -1.85
VPS53-212ENST00000572259 LINC00167Q96N53 147 aa3.49□□□□□ -1.85
VPS53-212ENST00000572259 NDUFA12Q9UI09 145 aa3.49□□□□□ -1.85
VPS53-212ENST00000572259 R4GN34 69 aa3.49□□□□□ -1.85
VPS53-212ENST00000572259 SYS1-DBNDD2H3BUS1 97 aa3.48□□□□□ -1.85
VPS53-212ENST00000572259 CASC2Q6XLA1 102 aa3.48□□□□□ -1.85
VPS53-212ENST00000572259 BCE1O60756 84 aa3.47□□□□□ -1.85
VPS53-212ENST00000572259 SMIM13P0DJ93 91 aa3.47□□□□□ -1.85
VPS53-212ENST00000572259 OBSCNQ5VST9 7968 aa3.47□□□□□ -1.85
VPS53-212ENST00000572259 HERC1Q15751 4861 aa3.46□□□□□ -1.86
VPS53-212ENST00000572259 ERC2-IT1O76042 136 aa3.46□□□□□ -1.86
VPS53-212ENST00000572259 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
VPS53-212ENST00000572259 PMCHL2Q9BQD1 86 aa3.46□□□□□ -1.86
VPS53-212ENST00000572259 IGKV2-28A0A075B6P5 120 aa3.45□□□□□ -1.86
VPS53-212ENST00000572259 IGKV2D-28P01615 120 aa3.45□□□□□ -1.86
VPS53-212ENST00000572259 KRTDAPP60985 99 aa3.45□□□□□ -1.86
VPS53-212ENST00000572259 Q9BRP9 147 aa3.45□□□□□ -1.86
VPS53-212ENST00000572259 C3orf79P0CE67 100 aa3.44□□□□□ -1.86
VPS53-212ENST00000572259 KRTAP11-1Q8IUC1 163 aa3.44□□□□□ -1.86
VPS53-212ENST00000572259 F8W1H4 67 aa3.43□□□□□ -1.86
VPS53-212ENST00000572259 MT1HL1P0DM35 61 aa3.43□□□□□ -1.86
VPS53-212ENST00000572259 HINT1P49773 126 aaPredicted RBP3.43□□□□□ -1.86
VPS53-212ENST00000572259 KRTAP10-8P60410 259 aa3.43□□□□□ -1.86
VPS53-212ENST00000572259 S100A7L2Q5SY68 101 aa3.43□□□□□ -1.86
VPS53-212ENST00000572259 TNXBP22105 4242 aa3.43□□□□□ -1.86
VPS53-212ENST00000572259 ETDCA0A1B0GVM5 59 aa3.42□□□□□ -1.86
VPS53-212ENST00000572259 ZNF815PA8K554 130 aa3.42□□□□□ -1.86
VPS53-212ENST00000572259 NCR3O14931 201 aa3.42□□□□□ -1.86
VPS53-212ENST00000572259 MIR22HGQ0VDD5 57 aa3.42□□□□□ -1.86
VPS53-212ENST00000572259 Q1T7F1 81 aa3.42□□□□□ -1.86
VPS53-212ENST00000572259 K7EP34 96 aa3.41□□□□□ -1.86
VPS53-212ENST00000572259 RBM3P98179 157 aaKnown RBP3.41□□□□□ -1.86
VPS53-212ENST00000572259 PPDPFLQ8WWR9 84 aa3.41□□□□□ -1.86
VPS53-212ENST00000572259 KCNQ1DNQ9H478 68 aa3.41□□□□□ -1.86
VPS53-212ENST00000572259 PRLHP81277 87 aa3.4□□□□□ -1.87
VPS53-212ENST00000572259 Q8N9L7 120 aa3.4□□□□□ -1.87
VPS53-212ENST00000572259 PRO2289Q9P1D8 64 aa3.4□□□□□ -1.87
VPS53-212ENST00000572259 TRBV10-3A0A0K0K1G6 114 aa3.39□□□□□ -1.87
VPS53-212ENST00000572259 A0A1W2PNM2 257 aa3.39□□□□□ -1.87
VPS53-212ENST00000572259 CCKP06307 115 aa3.39□□□□□ -1.87
VPS53-212ENST00000572259 KRTAP13-1Q8IUC0 172 aa3.39□□□□□ -1.87
VPS53-212ENST00000572259 LINC00308Q8TCZ7 52 aa3.39□□□□□ -1.87
VPS53-212ENST00000572259 ANAPC11Q9NYG5 84 aa3.39□□□□□ -1.87
VPS53-212ENST00000572259 TRAV23DV6A0A075B6W5 121 aa3.38□□□□□ -1.87
VPS53-212ENST00000572259 P0C880 135 aa3.38□□□□□ -1.87
VPS53-212ENST00000572259 HRES1P13985 223 aa3.38□□□□□ -1.87
VPS53-212ENST00000572259 SPRR1AP35321 89 aa3.38□□□□□ -1.87
VPS53-212ENST00000572259 IGLV6-57P01721 117 aa3.37□□□□□ -1.87
VPS53-212ENST00000572259 TRBV7-7A0A0K0K1E9 115 aa3.36□□□□□ -1.87
VPS53-212ENST00000572259 hADV29S1A0JD25 119 aa3.36□□□□□ -1.87
VPS53-212ENST00000572259 ATOX1O00244 68 aa3.36□□□□□ -1.87
VPS53-212ENST00000572259 SPAG11AQ6PDA7 123 aa3.36□□□□□ -1.87
VPS53-212ENST00000572259 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.36□□□□□ -1.87
VPS53-212ENST00000572259 Q6ZRX8 168 aa3.36□□□□□ -1.87
VPS53-212ENST00000572259 TRAV13-2A0A0B4J235 113 aa3.35□□□□□ -1.87
VPS53-212ENST00000572259 LINC00304Q8N9R0 145 aa3.35□□□□□ -1.87
VPS53-212ENST00000572259 SPRR4Q96PI1 79 aa3.35□□□□□ -1.87
VPS53-212ENST00000572259 UQCR10Q9UDW1 63 aa3.35□□□□□ -1.87
VPS53-212ENST00000572259 MUSTN1Q8IVN3 82 aa3.34□□□□□ -1.87
VPS53-212ENST00000572259 CYP4F30PQ9H0H9 118 aa3.34□□□□□ -1.87
VPS53-212ENST00000572259 COX7BP24311 80 aa3.33□□□□□ -1.88
VPS53-212ENST00000572259 SSBP3-AS1Q7Z2R9 100 aa3.33□□□□□ -1.88
VPS53-212ENST00000572259 KRTAP9-6A8MVA2 160 aa3.32□□□□□ -1.88
VPS53-212ENST00000572259 COX8AP10176 69 aa3.32□□□□□ -1.88
VPS53-212ENST00000572259 KRTAP13-2Q52LG2 175 aa3.32□□□□□ -1.88
VPS53-212ENST00000572259 KRTAP4-3Q9BYR4 195 aa3.32□□□□□ -1.88
VPS53-212ENST00000572259 HMCN2Q8NDA2 5059 aa3.31□□□□□ -1.88
VPS53-212ENST00000572259 SPINK1P00995 79 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms