RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 IGKV2-40A0A087WW87 121 aaPredicted RBP1.39□□□□□ -2.19
VPS35-209ENST00000568642 MYMXA0A1B0GTQ4 84 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 KANTRA0A1W2PQU2 76 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 CCL22O00626 93 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 IGKV2D-40P01614 121 aaPredicted RBP1.39□□□□□ -2.19
VPS35-209ENST00000568642 ACYP1P07311 99 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 SSBP1Q04837 148 aaKnown RBP1.39□□□□□ -2.19
VPS35-209ENST00000568642 HMGN3Q15651 99 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 FAM74A4Q5TZK3 123 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 LINC00208Q96KT6 92 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 WFDC6Q9BQY6 131 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 UBE2D4Q9Y2X8 147 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 LINC01558Q9Y6Z2 57 aa1.39□□□□□ -2.19
VPS35-209ENST00000568642 TRBV7-4A0A0J9YYF1 115 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 UMAD1C9J7I0 102 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 M0R2T5 61 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 PPP1R17O96001 155 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 SAA2P0DJI9 122 aaPredicted RBP1.38□□□□□ -2.19
VPS35-209ENST00000568642 SPAG11BQ08648 103 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 SPAG11AQ6PDA7 123 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 Q6ZSA8 131 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 PPP1R1CQ8WVI7 109 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 PRR15LQ9BU68 103 aa1.38□□□□□ -2.19
VPS35-209ENST00000568642 IGKV2-28A0A075B6P5 120 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.37□□□□□ -2.19
VPS35-209ENST00000568642 TRGV4A0A0C4DH28 118 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 M0R135 149 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 IGKV2D-28P01615 120 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 ARMS2P0C7Q2 107 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 SPINK7P58062 85 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 KRTAP13-4Q3LI77 160 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 Q6JHZ5 121 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 TXNDC17Q9BRA2 123 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 ARL2-SNX15V9GYD0 113 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 V9GYH0 126 aa1.37□□□□□ -2.19
VPS35-209ENST00000568642 A0A087WVE0 104 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 TRBV6-5A0A0K0K1A5 114 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 LOC285095A0A1B0GVY8 99 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 SMIM13P0DJ93 91 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 S100A3P33764 101 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 FXYD4P59646 89 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 PSMG4Q5JS54 123 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 COA5Q86WW8 74 aa1.36□□□□□ -2.19
VPS35-209ENST00000568642 ZCCHC13Q8WW36 166 aaKnown RBP1.36□□□□□ -2.19
VPS35-209ENST00000568642 ZNF815PA8K554 130 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 F8VRH5 84 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 M0R1W7 72 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 IGKV4-1P06312 121 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 COX8AP10176 69 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 GNGT1P63211 74 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 KRTAP19-6Q3LI70 58 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 HILPDAQ9Y5L2 63 aa1.35□□□□□ -2.19
VPS35-209ENST00000568642 M0R3E3 92 aa1.34□□□□□ -2.19
VPS35-209ENST00000568642 SFTA3P0C7M3 94 aa1.34□□□□□ -2.19
VPS35-209ENST00000568642 GCHFRP30047 84 aa1.34□□□□□ -2.19
VPS35-209ENST00000568642 PLGLAQ15195 96 aa1.34□□□□□ -2.19
VPS35-209ENST00000568642 GDF5OSQ5U4N7 250 aa1.34□□□□□ -2.19
VPS35-209ENST00000568642 AHNAKQ09666 5890 aaKnown RBP1.34□□□□□ -2.2
VPS35-209ENST00000568642 FXYD6-FXYD2A0A087WZ82 144 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 CEBPZOSA8MTT3 80 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 FXYD1O00168 92 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 C3orf79P0CE67 100 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 NCBP2-AS2Q69YL0 99 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 SNURFQ9Y675 71 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 MUC19Q7Z5P9 8384 aa1.33□□□□□ -2.2
VPS35-209ENST00000568642 TRGV2A0A075B6R0 118 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 TRGV1A0A0A0MS02 117 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 DNAL4O96015 105 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 SPRR2EP22531 72 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 SPRR2BP35325 72 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 SPRR2AP35326 72 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 KRTAP10-10P60014 251 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 SPATA8Q6RVD6 105 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 OBSCN-AS1Q96MR7 158 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 V9GYV3 84 aa1.32□□□□□ -2.2
VPS35-209ENST00000568642 G3V318 75 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 UQCR11O14957 56 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 SMIM11AP58511 58 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 KRTAP12-2P59991 146 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 PCOTHQ58A44 107 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 BAGE2Q86Y30 109 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 TMEM14CQ9P0S9 112 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 KAAG1Q9UBP8 84 aa1.31□□□□□ -2.2
VPS35-209ENST00000568642 IGKV2-24A0A0C4DH68 120 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 A0A1B0GWA3 101 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 J3QRE1 110 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 LEPROTL1O95214 131 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 HTN3P15516 51 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 C6orf201Q7Z4U5 140 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 KRTAP4-1Q9BYQ7 146 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 R4GMQ9 66 aa1.3□□□□□ -2.2
VPS35-209ENST00000568642 LINC00959A0A1B0GUT2 108 aa1.29□□□□□ -2.2
VPS35-209ENST00000568642 KRTAP19-2Q3LHN2 52 aa1.29□□□□□ -2.2
VPS35-209ENST00000568642 DEFB107AQ8IZN7 70 aa1.29□□□□□ -2.2
VPS35-209ENST00000568642 A0A087WXM4 84 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 TRAV1-2A0A0B4J238 106 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 D6R8Y8 96 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 IFI6P09912 130 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 SPRR2DP22532 72 aa1.28□□□□□ -2.2
VPS35-209ENST00000568642 IFI27P40305 119 aaPredicted RBP1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms