RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 FAT4Q6V0I7 4981 aa0.7□□□□□ -2.3
PRKDC-208ENST00000536710 TRGV1A0A0A0MS02 117 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 NAP1L6A6NFF2 107 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 FAM24AA6NFZ4 105 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 FAUP35544 74 aaKnown RBP0.69□□□□□ -2.3
PRKDC-208ENST00000536710 CFAP126Q5VTH2 177 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 TOMM5Q8N4H5 51 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 DEFB104AQ8WTQ1 72 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 NMES1Q9C002 83 aa0.69□□□□□ -2.3
PRKDC-208ENST00000536710 TRAV21A0A0B4J279 112 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 UBE2L5PA0A1B0GUS4 154 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 F6UZH7 168 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 MPC2O95563 127 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 HTN1P15515 57 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 FGF7P21781 194 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 CRIP1P50238 77 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 LELP1Q5T871 98 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 ENHOQ6UWT2 76 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 LINC01600Q96MT4 127 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 AQP10Q96PS8 301 aa0.68□□□□□ -2.3
PRKDC-208ENST00000536710 TRBV7-3A0A075B6L6 115 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 A0A087WWC5 75 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 TRBV6-1A0A0K0K1D8 114 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 SIX6O95475 246 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 GCHFRP30047 84 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 UBE2D3P61077 147 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 UBE2D2P62837 147 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 UBE2L3P68036 154 aaKnown RBP0.67□□□□□ -2.3
PRKDC-208ENST00000536710 SERF2P84101 59 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 S100A7L2Q5SY68 101 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 SMIM11BQ8TCY0 68 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 CNFNQ9BYD5 112 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 TMEM191AQ9H0A3 160 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 PAIP2BQ9ULR5 123 aaKnown RBP0.67□□□□□ -2.3
PRKDC-208ENST00000536710 ARL2-SNX15V9GYD0 113 aa0.67□□□□□ -2.3
PRKDC-208ENST00000536710 H3BVH4 76 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 M0QY20 66 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 ARMS2P0C7Q2 107 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 ASIPP42127 132 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 S100A10P60903 97 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 Q0VG73 95 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 Q5BKY6 102 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 SPTSSBQ8NFR3 76 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 TCEAL7Q9BRU2 100 aa0.66□□□□□ -2.3
PRKDC-208ENST00000536710 A0A096LNI7 61 aa0.65□□□□□ -2.31
PRKDC-208ENST00000536710 GVQW2A0A096LPI5 108 aaPredicted RBP0.65□□□□□ -2.31
PRKDC-208ENST00000536710 CTXND1A0A1B0GTU2 59 aa0.65□□□□□ -2.31
PRKDC-208ENST00000536710 ACYP2P14621 99 aa0.65□□□□□ -2.31
PRKDC-208ENST00000536710 S100ZQ8WXG8 99 aa0.65□□□□□ -2.31
PRKDC-208ENST00000536710 TMEM167BQ9NRX6 74 aa0.65□□□□□ -2.31
PRKDC-208ENST00000536710 MUC17Q685J3 4493 aa0.65□□□□□ -2.31
PRKDC-208ENST00000536710 FLGP20930 4061 aaPredicted RBP0.65□□□□□ -2.31
PRKDC-208ENST00000536710 TRBV25-1A0A075B6N4 114 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 LINC00959A0A1B0GUT2 108 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 UMAD1C9J7I0 102 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 POLR2KP53803 58 aaKnown RBP0.64□□□□□ -2.31
PRKDC-208ENST00000536710 PKIAP61925 76 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 S100A12P80511 92 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 COX6A2Q02221 97 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 KRTAP19-2Q3LHN2 52 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 CLPSL2Q6UWE3 100 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 C9orf62Q8N4C0 152 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 CDC42SE2Q9NRR3 84 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 FSIP2Q5CZC0 6907 aa0.64□□□□□ -2.31
PRKDC-208ENST00000536710 FXYD6-FXYD2A0A087WZ82 144 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 BAGE2Q86Y30 109 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 RPL39LQ96EH5 51 aaKnown RBP0.63□□□□□ -2.31
PRKDC-208ENST00000536710 Q96NJ1 140 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 DPH3P1Q9H4G8 78 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 MANBALQ9NQG1 85 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 LINC00474Q9P2X8 69 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 UBE2D4Q9Y2X8 147 aa0.63□□□□□ -2.31
PRKDC-208ENST00000536710 AHNAK2Q8IVF2 5795 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 SMIM27A0A1W2PRY6 76 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 TMEM262E9PQX1 116 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 I3L3M4 83 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 MGPP08493 103 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 GNG4P50150 75 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 FAM213BQ8TBF2 198 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 GNG13Q9P2W3 67 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 C6orf48Q9UBA6 75 aa0.62□□□□□ -2.31
PRKDC-208ENST00000536710 USH2AO75445 5202 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 A0A1B0GUT8 65 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 KANTRA0A1W2PQU2 76 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 C7orf77A4D0Y5 90 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 LINC01546A6NGU7 62 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 IGIPA6NJ69 53 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 NDUFA1O15239 70 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 UBE2D1P51668 147 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 RPL39P62891 51 aaKnown RBP0.61□□□□□ -2.31
PRKDC-208ENST00000536710 MT1HP80294 61 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 SPAG11BQ08648 103 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 C5orf38Q86SI9 138 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 Q8IZM0 81 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 AMELXQ99217 191 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 C20orf78Q9BR46 151 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 SMIM2Q9BVW6 85 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 SEC11CQ9BY50 192 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 ST20Q9HBF5 79 aa0.61□□□□□ -2.31
PRKDC-208ENST00000536710 MUC5BQ9HC84 5762 aaPredicted RBP0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms