RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 XAF1Q6GPH4 301 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 FAM223AQ8IWN6 122 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 SPTSSBQ8NFR3 76 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 S100A16Q96FQ6 103 aaKnown RBP0.82□□□□□ -2.28
CD44-233ENST00000531141 TRGV9Q99603 122 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 PRO1933Q9H354 126 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 CACFD1Q9UGQ2 172 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 AHNAKQ09666 5890 aaKnown RBP0.81□□□□□ -2.28
CD44-233ENST00000531141 IGLC7A0M8Q6 106 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 CRYM-AS1A6NIL9 109 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 UMAD1C9J7I0 102 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 GNGT2O14610 69 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 PRH1P02810 166 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 COX6CP09669 75 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 APELAP0DMC3 54 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 RPL38P63173 70 aaKnown RBP0.81□□□□□ -2.28
CD44-233ENST00000531141 WFDC2Q14508 124 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 FAM74A4Q5TZK3 123 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 KRTAP5-10Q6L8G5 202 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 Q86TA4 180 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 SERP2Q8N6R1 65 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 FAM167A-AS1Q96KT0 104 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 RHPN1-AS1Q9BWJ2 59 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 SPCS1Q9Y6A9 102 aa0.81□□□□□ -2.28
CD44-233ENST00000531141 DSTQ03001 7570 aaKnown RBP0.8□□□□□ -2.28
CD44-233ENST00000531141 TRBV7-3A0A075B6L6 115 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 A0A096LPF7 62 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 A0A1W2PPM0 123 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 CPSF4LA6NMK7 179 aaKnown RBP0.8□□□□□ -2.28
CD44-233ENST00000531141 F2Z2F3 143 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 SYS1-DBNDD2H3BUS1 97 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 CFDP00746 253 aaPredicted RBP0.8□□□□□ -2.28
CD44-233ENST00000531141 MT-ATP8P03928 68 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 NMBP08949 121 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 ZNF137PP52743 207 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 GNG11P61952 73 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 KLKP1Q107X0 134 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 ZNF56Q15929 161 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 KRTAP19-2Q3LHN2 52 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 TMEM170BQ5T4T1 132 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 ATP5EP2Q5VTU8 51 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 COX7B2Q8TF08 81 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 AMELXQ99217 191 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 LENEPQ9Y5L5 61 aa0.8□□□□□ -2.28
CD44-233ENST00000531141 LOC101927531A0A1B0GV80 90 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 NDUFA4O00483 81 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 IGLC2P0DOY2 106 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 IGLC3P0DOY3 106 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 S100A3P33764 101 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 FAUP35544 74 aaKnown RBP0.79□□□□□ -2.28
CD44-233ENST00000531141 FXYD4P59646 89 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 UBE2D3P61077 147 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 UBE2D2P62837 147 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 ALKAL2Q6UX46 152 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 LINC00575Q6W349 94 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 Q6ZQY7 126 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 LINC00643Q86TS7 51 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 WFDC10BQ8IUB3 73 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 C20orf197Q8N268 126 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 FAM213BQ8TBF2 198 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 OBSCN-AS1Q96MR7 158 aa0.79□□□□□ -2.28
CD44-233ENST00000531141 TIMM8BQ9Y5J9 83 aaPredicted RBP0.79□□□□□ -2.28
CD44-233ENST00000531141 hADV29S1A0JD25 119 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 TMEM14DPA8MWL7 114 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 SFTA3P0C7M3 94 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 RPS27P42677 84 aaKnown RBP0.78□□□□□ -2.28
CD44-233ENST00000531141 ETDBQ3ZM63 59 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 BVES-AS1Q5T3Y7 98 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 C6orf201Q7Z4U5 140 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 NOP10Q9NPE3 64 aaKnown RBP0.78□□□□□ -2.28
CD44-233ENST00000531141 NXT2Q9NPJ8 142 aaKnown RBP0.78□□□□□ -2.28
CD44-233ENST00000531141 LINC00474Q9P2X8 69 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 PRO1854Q9UHT4 67 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 V9GYV3 84 aa0.78□□□□□ -2.28
CD44-233ENST00000531141 FLGP20930 4061 aaPredicted RBP0.78□□□□□ -2.29
CD44-233ENST00000531141 C7orf77A4D0Y5 90 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 SNRPGP15A8MWD9 76 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 H3BUT2 72 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 SMIM13P0DJ93 91 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 SAA2P0DJI9 122 aaPredicted RBP0.77□□□□□ -2.29
CD44-233ENST00000531141 SPRR2EP22531 72 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 SPRR2BP35325 72 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 SPRR2AP35326 72 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 KLK9Q2XQG4 91 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 LINC01556Q5JQF7 62 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 CFAP126Q5VTH2 177 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 COX6B2Q6YFQ2 88 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 C18orf32Q8TCD1 76 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 NDUFA4L2Q9NRX3 87 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 PLAC8Q9NZF1 115 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 R4GMQ9 66 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 V9GYH0 126 aa0.77□□□□□ -2.29
CD44-233ENST00000531141 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 TRAV22A0A0B4J277 110 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 TRBV30A0A0K0K1B3 111 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 ZNF815PA8K554 130 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 FXYD1O00168 92 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 NCR3O14931 201 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 NDUFB1O75438 58 aa0.76□□□□□ -2.29
CD44-233ENST00000531141 PPP1R17O96001 155 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms