RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 RAB37Q96AX2 223 aa3.96□□□□□ -1.78
CD44-232ENST00000531118 C14orf144Q96I85 54 aa3.96□□□□□ -1.78
CD44-232ENST00000531118 RBM12B-AS1Q9P1G2 102 aa3.96□□□□□ -1.78
CD44-232ENST00000531118 LINC00575Q6W349 94 aa3.95□□□□□ -1.78
CD44-232ENST00000531118 HIGD1BQ9P298 99 aa3.95□□□□□ -1.78
CD44-232ENST00000531118 C12orf57Q99622 126 aa3.94□□□□□ -1.78
CD44-232ENST00000531118 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.93□□□□□ -1.78
CD44-232ENST00000531118 PPDPFLQ8WWR9 84 aa3.93□□□□□ -1.78
CD44-232ENST00000531118 A0A0B4J2C4 111 aa3.92□□□□□ -1.78
CD44-232ENST00000531118 A8MWP4 228 aa3.92□□□□□ -1.78
CD44-232ENST00000531118 H0YGX0 51 aa3.92□□□□□ -1.78
CD44-232ENST00000531118 OCIAD2Q56VL3 154 aa3.92□□□□□ -1.78
CD44-232ENST00000531118 Q6ZQY7 126 aa3.92□□□□□ -1.78
CD44-232ENST00000531118 SNHG12Q9BXW3 62 aa3.92□□□□□ -1.78
CD44-232ENST00000531118 TRBV7-7A0A0K0K1E9 115 aa3.91□□□□□ -1.78
CD44-232ENST00000531118 KRTAP16-1A8MUX0 517 aa3.91□□□□□ -1.78
CD44-232ENST00000531118 Q6JHZ5 121 aa3.91□□□□□ -1.78
CD44-232ENST00000531118 CEND1Q8N111 149 aa3.91□□□□□ -1.78
CD44-232ENST00000531118 PRO1854Q9UHT4 67 aa3.91□□□□□ -1.78
CD44-232ENST00000531118 A6NN06 94 aa3.9□□□□□ -1.79
CD44-232ENST00000531118 C2orf91Q6ZV80 131 aa3.9□□□□□ -1.79
CD44-232ENST00000531118 A0A1B0GX51 115 aa3.88□□□□□ -1.79
CD44-232ENST00000531118 COX6CP09669 75 aa3.88□□□□□ -1.79
CD44-232ENST00000531118 HSD52Q0P140 79 aa3.88□□□□□ -1.79
CD44-232ENST00000531118 PYY3Q5JQD4 70 aa3.88□□□□□ -1.79
CD44-232ENST00000531118 CLEC2BQ92478 149 aa3.88□□□□□ -1.79
CD44-232ENST00000531118 H3BQ85 93 aa3.87□□□□□ -1.79
CD44-232ENST00000531118 PSMB2P49721 201 aa3.87□□□□□ -1.79
CD44-232ENST00000531118 UQCR10Q9UDW1 63 aa3.87□□□□□ -1.79
CD44-232ENST00000531118 DNAL4O96015 105 aa3.86□□□□□ -1.79
CD44-232ENST00000531118 FXYD2P54710 66 aa3.86□□□□□ -1.79
CD44-232ENST00000531118 NOTCH2NLQ7Z3S9 236 aa3.86□□□□□ -1.79
CD44-232ENST00000531118 LST1O00453 97 aa3.85□□□□□ -1.79
CD44-232ENST00000531118 FABP2P12104 132 aa3.85□□□□□ -1.79
CD44-232ENST00000531118 NDUFV3P56181 108 aaKnown RBP3.85□□□□□ -1.79
CD44-232ENST00000531118 DSCR10P59022 87 aa3.84□□□□□ -1.79
CD44-232ENST00000531118 MTURNQ8N3F0 131 aa3.84□□□□□ -1.79
CD44-232ENST00000531118 SS18L2Q9UHA2 77 aa3.84□□□□□ -1.79
CD44-232ENST00000531118 H3BMG7 143 aa3.83□□□□□ -1.8
CD44-232ENST00000531118 H3BUT2 72 aa3.83□□□□□ -1.8
CD44-232ENST00000531118 TEN1Q86WV5 123 aa3.83□□□□□ -1.8
CD44-232ENST00000531118 FAM218AQ96MZ4 157 aa3.83□□□□□ -1.8
CD44-232ENST00000531118 KRTAP2-1Q9BYU5 128 aa3.83□□□□□ -1.8
CD44-232ENST00000531118 ORMDL1Q9P0S3 153 aa3.83□□□□□ -1.8
CD44-232ENST00000531118 TMEM256-PLSCR3K7ERE1 68 aa3.82□□□□□ -1.8
CD44-232ENST00000531118 K7ERJ3 54 aa3.81□□□□□ -1.8
CD44-232ENST00000531118 SCGB1C2P0DMR2 95 aa3.81□□□□□ -1.8
CD44-232ENST00000531118 SPRR2EP22531 72 aa3.81□□□□□ -1.8
CD44-232ENST00000531118 SPRR2BP35325 72 aa3.81□□□□□ -1.8
CD44-232ENST00000531118 SPRR2AP35326 72 aa3.81□□□□□ -1.8
CD44-232ENST00000531118 M0R143 59 aa3.8□□□□□ -1.8
CD44-232ENST00000531118 ANKRD29Q8N6D5 301 aa3.8□□□□□ -1.8
CD44-232ENST00000531118 MT1BP07438 61 aa3.79□□□□□ -1.8
CD44-232ENST00000531118 KRTAP10-5P60370 271 aa3.79□□□□□ -1.8
CD44-232ENST00000531118 A0A087WSZ3 146 aa3.78□□□□□ -1.8
CD44-232ENST00000531118 TRACP01848 142 aa3.78□□□□□ -1.8
CD44-232ENST00000531118 SMIM6P0DI80 62 aa3.78□□□□□ -1.8
CD44-232ENST00000531118 TRBV7-4A0A0J9YYF1 115 aa3.77□□□□□ -1.81
CD44-232ENST00000531118 SIGMAR1Q99720 223 aa3.77□□□□□ -1.81
CD44-232ENST00000531118 TSTD3H0UI37 97 aa3.76□□□□□ -1.81
CD44-232ENST00000531118 DSCR8Q96T75 97 aa3.76□□□□□ -1.81
CD44-232ENST00000531118 A0A1B0GV72 72 aa3.75□□□□□ -1.81
CD44-232ENST00000531118 CCKP06307 115 aa3.75□□□□□ -1.81
CD44-232ENST00000531118 RBM3P98179 157 aaKnown RBP3.75□□□□□ -1.81
CD44-232ENST00000531118 LYRM7Q5U5X0 104 aa3.75□□□□□ -1.81
CD44-232ENST00000531118 SPRR2FQ96RM1 72 aa3.75□□□□□ -1.81
CD44-232ENST00000531118 A0A1W2PNM2 257 aa3.74□□□□□ -1.81
CD44-232ENST00000531118 BAALC-AS2P0C853 105 aa3.74□□□□□ -1.81
CD44-232ENST00000531118 KRTAP10-7P60409 375 aaPredicted RBP3.74□□□□□ -1.81
CD44-232ENST00000531118 ATXN8Q156A1 80 aa3.74□□□□□ -1.81
CD44-232ENST00000531118 Q5VV11 94 aa3.74□□□□□ -1.81
CD44-232ENST00000531118 C9JAW5 83 aa3.73□□□□□ -1.81
CD44-232ENST00000531118 LINC00313P59037 77 aa3.73□□□□□ -1.81
CD44-232ENST00000531118 VPS25Q9BRG1 176 aa3.73□□□□□ -1.81
CD44-232ENST00000531118 JMJD7-PLA2G4BH0Y9G9 81 aa3.72□□□□□ -1.81
CD44-232ENST00000531118 IGKV4-1P06312 121 aa3.72□□□□□ -1.81
CD44-232ENST00000531118 WFDC13Q8IUB5 93 aa3.72□□□□□ -1.81
CD44-232ENST00000531118 SPINK7P58062 85 aa3.71□□□□□ -1.82
CD44-232ENST00000531118 PDE6GP18545 87 aa3.7□□□□□ -1.82
CD44-232ENST00000531118 BATFQ16520 125 aa3.7□□□□□ -1.82
CD44-232ENST00000531118 KRTAP19-8Q3LI54 63 aa3.7□□□□□ -1.82
CD44-232ENST00000531118 PRAC1Q96KF2 57 aa3.7□□□□□ -1.82
CD44-232ENST00000531118 A0A1B0GW54 56 aa3.69□□□□□ -1.82
CD44-232ENST00000531118 J3KT08 172 aa3.69□□□□□ -1.82
CD44-232ENST00000531118 SPRR2DP22532 72 aa3.69□□□□□ -1.82
CD44-232ENST00000531118 LCE1EQ5T753 118 aa3.69□□□□□ -1.82
CD44-232ENST00000531118 NAA38Q9BRA0 125 aaKnown RBP3.69□□□□□ -1.82
CD44-232ENST00000531118 NDUFAF8A1L188 74 aa3.68□□□□□ -1.82
CD44-232ENST00000531118 DEFB116Q30KQ4 102 aa3.68□□□□□ -1.82
CD44-232ENST00000531118 ZCCHC13Q8WW36 166 aaKnown RBP3.68□□□□□ -1.82
CD44-232ENST00000531118 LINC00472Q9H8W2 130 aa3.68□□□□□ -1.82
CD44-232ENST00000531118 LOC110117498A0A087WWA1 95 aa3.67□□□□□ -1.82
CD44-232ENST00000531118 IGHV6-1A0A0B4J1U7 121 aa3.67□□□□□ -1.82
CD44-232ENST00000531118 C8orf87E5RJ46 101 aa3.67□□□□□ -1.82
CD44-232ENST00000531118 NDUFB1O75438 58 aa3.67□□□□□ -1.82
CD44-232ENST00000531118 LOC105371267A0A1B0GV96 52 aa3.66□□□□□ -1.82
CD44-232ENST00000531118 Q6ZQT0 140 aa3.66□□□□□ -1.82
CD44-232ENST00000531118 A0A1B0GVX0 72 aa3.65□□□□□ -1.83
CD44-232ENST00000531118 SPRR2GQ9BYE4 73 aa3.64□□□□□ -1.83
CD44-232ENST00000531118 C14orf132Q9NPU4 83 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms