RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 LINC00313P59037 77 aa5.84□□□□□ -1.47
VCAN-210ENST00000513960 A0A1B0GU69 56 aa5.83□□□□□ -1.48
VCAN-210ENST00000513960 A0A087X002 238 aa5.82□□□□□ -1.48
VCAN-210ENST00000513960 Q6ZRN7 208 aaPredicted RBP5.82□□□□□ -1.48
VCAN-210ENST00000513960 NOTCH2NLQ7Z3S9 236 aa5.82□□□□□ -1.48
VCAN-210ENST00000513960 PANO1I0J062 215 aa5.82□□□□□ -1.48
VCAN-210ENST00000513960 ADM2Q7Z4H4 148 aa5.82□□□□□ -1.48
VCAN-210ENST00000513960 DNAH9Q9NYC9 4486 aa5.82□□□□□ -1.48
VCAN-210ENST00000513960 SPINK1P00995 79 aa5.82□□□□□ -1.48
VCAN-210ENST00000513960 ACYP2P14621 99 aa5.81□□□□□ -1.48
VCAN-210ENST00000513960 LYSTQ99698 3801 aa5.81□□□□□ -1.48
VCAN-210ENST00000513960 K7ERS5 55 aa5.81□□□□□ -1.48
VCAN-210ENST00000513960 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.8□□□□□ -1.48
VCAN-210ENST00000513960 CSMD3Q7Z407 3707 aa5.8□□□□□ -1.48
VCAN-210ENST00000513960 A0A087WTM6 91 aa5.79□□□□□ -1.48
VCAN-210ENST00000513960 SPACA4Q8TDM5 124 aa5.79□□□□□ -1.48
VCAN-210ENST00000513960 RTL8CO15255 209 aa5.77□□□□□ -1.49
VCAN-210ENST00000513960 KRTAP13-1Q8IUC0 172 aa5.77□□□□□ -1.49
VCAN-210ENST00000513960 LINC01554Q52M75 96 aa5.76□□□□□ -1.49
VCAN-210ENST00000513960 Q5W150 140 aa5.76□□□□□ -1.49
VCAN-210ENST00000513960 Q6ZR54 194 aa5.76□□□□□ -1.49
VCAN-210ENST00000513960 IGKV2D-30A0A075B6S6 120 aa5.75□□□□□ -1.49
VCAN-210ENST00000513960 IGKV2-30P06310 120 aa5.75□□□□□ -1.49
VCAN-210ENST00000513960 Q96NJ1 140 aa5.75□□□□□ -1.49
VCAN-210ENST00000513960 PLECQ15149 4684 aaKnown RBP5.75□□□□□ -1.49
VCAN-210ENST00000513960 SPINT4Q6UDR6 99 aa5.75□□□□□ -1.49
VCAN-210ENST00000513960 IGLV5-52A0A0A0MRZ9 124 aa5.73□□□□□ -1.49
VCAN-210ENST00000513960 MIR22HGQ0VDD5 57 aa5.73□□□□□ -1.49
VCAN-210ENST00000513960 PSORS1C2Q9UIG4 136 aa5.73□□□□□ -1.49
VCAN-210ENST00000513960 DYNC2H1Q8NCM8 4307 aaKnown RBP5.72□□□□□ -1.49
VCAN-210ENST00000513960 C1orf134Q5TEV5 83 aa5.72□□□□□ -1.49
VCAN-210ENST00000513960 DNAH7Q8WXX0 4024 aa5.71□□□□□ -1.49
VCAN-210ENST00000513960 ZNF861PO60384 105 aa5.7□□□□□ -1.5
VCAN-210ENST00000513960 SSBP3-AS1Q7Z2R9 100 aa5.7□□□□□ -1.5
VCAN-210ENST00000513960 LINC00483Q53H64 154 aa5.7□□□□□ -1.5
VCAN-210ENST00000513960 PLAC8Q9NZF1 115 aa5.7□□□□□ -1.5
VCAN-210ENST00000513960 UQCR11O14957 56 aa5.7□□□□□ -1.5
VCAN-210ENST00000513960 LY6G6CO95867 125 aa5.69□□□□□ -1.5
VCAN-210ENST00000513960 WWC2-AS2Q96NR7 200 aa5.68□□□□□ -1.5
VCAN-210ENST00000513960 CSAG1Q6PB30 78 aa5.67□□□□□ -1.5
VCAN-210ENST00000513960 STARD9Q9P2P6 4700 aa5.65□□□□□ -1.5
VCAN-210ENST00000513960 VPS13DQ5THJ4 4388 aa5.65□□□□□ -1.51
VCAN-210ENST00000513960 FAM229AH3BQW9 127 aa5.65□□□□□ -1.51
VCAN-210ENST00000513960 ASB16-AS1Q495Z4 193 aa5.64□□□□□ -1.51
VCAN-210ENST00000513960 IGLV7-43P04211 117 aa5.64□□□□□ -1.51
VCAN-210ENST00000513960 TGP01266 2768 aa5.63□□□□□ -1.51
VCAN-210ENST00000513960 DMAC1Q96GE9 116 aa5.62□□□□□ -1.51
VCAN-210ENST00000513960 Q8N1X5 172 aa5.61□□□□□ -1.51
VCAN-210ENST00000513960 PRKDCP78527 4128 aaKnown RBP5.61□□□□□ -1.51
VCAN-210ENST00000513960 PLA2G1BP04054 148 aaKnown RBP5.6□□□□□ -1.51
VCAN-210ENST00000513960 MEGF8Q7Z7M0 2845 aa5.59□□□□□ -1.52
VCAN-210ENST00000513960 SPATA8Q6RVD6 105 aa5.58□□□□□ -1.52
VCAN-210ENST00000513960 KRTAP10-2P60368 255 aa5.57□□□□□ -1.52
VCAN-210ENST00000513960 CRIPTQ9P021 101 aa5.57□□□□□ -1.52
VCAN-210ENST00000513960 KMT2AQ03164 3969 aa5.56□□□□□ -1.52
VCAN-210ENST00000513960 DNAH17Q9UFH2 4485 aa5.55□□□□□ -1.52
VCAN-210ENST00000513960 HECTD4Q9Y4D8 3996 aa5.55□□□□□ -1.52
VCAN-210ENST00000513960 DNAH2Q9P225 4427 aa5.54□□□□□ -1.52
VCAN-210ENST00000513960 DNAH8Q96JB1 4490 aa5.53□□□□□ -1.52
VCAN-210ENST00000513960 KRTAP13-3Q3SY46 172 aa5.5□□□□□ -1.53
VCAN-210ENST00000513960 FRAS1Q86XX4 4008 aa5.5□□□□□ -1.53
VCAN-210ENST00000513960 KRTAP10-1P60331 282 aa5.49□□□□□ -1.53
VCAN-210ENST00000513960 DNHD1Q96M86 4753 aa5.49□□□□□ -1.53
VCAN-210ENST00000513960 FBN3Q75N90 2809 aa5.48□□□□□ -1.53
VCAN-210ENST00000513960 Q6ZSA8 131 aa5.47□□□□□ -1.53
VCAN-210ENST00000513960 KRTAP13-2Q52LG2 175 aa5.46□□□□□ -1.54
VCAN-210ENST00000513960 DNAH11Q96DT5 4516 aa5.43□□□□□ -1.54
VCAN-210ENST00000513960 C9orf92A6NGG3 77 aa5.42□□□□□ -1.54
VCAN-210ENST00000513960 DNAH6Q9C0G6 4158 aa5.41□□□□□ -1.54
VCAN-210ENST00000513960 TYMSOSQ8TAI1 123 aa5.41□□□□□ -1.54
VCAN-210ENST00000513960 DNAH5Q8TE73 4624 aa5.41□□□□□ -1.54
VCAN-210ENST00000513960 A0A0A0MQY5 61 aa5.4□□□□□ -1.54
VCAN-210ENST00000513960 A0A1B0GU33 70 aa5.4□□□□□ -1.55
VCAN-210ENST00000513960 KRTAP1-4P0C5Y4 121 aa5.4□□□□□ -1.55
VCAN-210ENST00000513960 ALMS1Q8TCU4 4167 aa5.38□□□□□ -1.55
VCAN-210ENST00000513960 LRP1BQ9NZR2 4599 aa5.36□□□□□ -1.55
VCAN-210ENST00000513960 KRTAP25-1Q3LHN0 102 aa5.36□□□□□ -1.55
VCAN-210ENST00000513960 H0YAA0 97 aa5.34□□□□□ -1.55
VCAN-210ENST00000513960 A0A0D9SG42 100 aa5.34□□□□□ -1.55
VCAN-210ENST00000513960 KRTAP16-1A8MUX0 517 aa5.34□□□□□ -1.55
VCAN-210ENST00000513960 LINC00304Q8N9R0 145 aa5.34□□□□□ -1.55
VCAN-210ENST00000513960 HYDINQ4G0P3 5121 aa5.32□□□□□ -1.56
VCAN-210ENST00000513960 SMR3BP02814 79 aaPredicted RBP5.31□□□□□ -1.56
VCAN-210ENST00000513960 KRTAP21-3Q3LHN1 58 aa5.31□□□□□ -1.56
VCAN-210ENST00000513960 ROMO1P60602 79 aa5.31□□□□□ -1.56
VCAN-210ENST00000513960 A8MUU9 505 aa5.31□□□□□ -1.56
VCAN-210ENST00000513960 PKD1P98161 4303 aa5.3□□□□□ -1.56
VCAN-210ENST00000513960 H1FX-AS1Q4G0G2 97 aa5.3□□□□□ -1.56
VCAN-210ENST00000513960 NDUFAF8A1L188 74 aa5.3□□□□□ -1.56
VCAN-210ENST00000513960 FAT2Q9NYQ8 4349 aa5.29□□□□□ -1.56
VCAN-210ENST00000513960 VPS13BQ7Z7G8 4022 aa5.28□□□□□ -1.56
VCAN-210ENST00000513960 RPS29P62273 56 aaKnown RBP5.25□□□□□ -1.57
VCAN-210ENST00000513960 LUZP6Q538Z0 58 aa5.25□□□□□ -1.57
VCAN-210ENST00000513960 COX6B2Q6YFQ2 88 aa5.2□□□□□ -1.58
VCAN-210ENST00000513960 PKHD1P08F94 4074 aa5.18□□□□□ -1.58
VCAN-210ENST00000513960 A0A1B0GVY2 172 aa5.18□□□□□ -1.58
VCAN-210ENST00000513960 SACSQ9NZJ4 4579 aa5.17□□□□□ -1.58
VCAN-210ENST00000513960 DYNC1H1Q14204 4646 aaKnown RBP5.16□□□□□ -1.58
VCAN-210ENST00000513960 C10orf95Q9H7T3 257 aa5.16□□□□□ -1.58
VCAN-210ENST00000513960 RPL37P61927 97 aaKnown RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms