RNA–Protein interactions for RNA: ENST00000511044.1

PCDH1-206, Transcript of protocadherin 1, humanhuman

TSL 1 (best)

Gene PCDH1, Length 2,674 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-206ENST00000511044 A0A1W2PNN7 141 aa7.19□□□□□ -1.26
PCDH1-206ENST00000511044 FRAS1Q86XX4 4008 aa7.18□□□□□ -1.26
PCDH1-206ENST00000511044 P0C880 135 aa7.17□□□□□ -1.26
PCDH1-206ENST00000511044 CNBPP62633 177 aaKnown RBP7.17□□□□□ -1.26
PCDH1-206ENST00000511044 COA5Q86WW8 74 aa7.17□□□□□ -1.26
PCDH1-206ENST00000511044 CHTF8P0CG12 524 aa7.17□□□□□ -1.26
PCDH1-206ENST00000511044 RPL37AP61513 92 aaKnown RBP7.16□□□□□ -1.26
PCDH1-206ENST00000511044 SPAG11AQ6PDA7 123 aa7.16□□□□□ -1.26
PCDH1-206ENST00000511044 LY6G6CO95867 125 aa7.15□□□□□ -1.26
PCDH1-206ENST00000511044 KMT2CQ8NEZ4 4911 aaKnown RBP7.15□□□□□ -1.26
PCDH1-206ENST00000511044 KRTAP29-1A8MX34 341 aaPredicted RBP7.14□□□□□ -1.27
PCDH1-206ENST00000511044 H3BPC8 53 aa7.14□□□□□ -1.27
PCDH1-206ENST00000511044 C9orf163Q8N9P6 203 aa7.14□□□□□ -1.27
PCDH1-206ENST00000511044 IGFL1Q6UW32 110 aa7.14□□□□□ -1.27
PCDH1-206ENST00000511044 A0A087WSZ3 146 aa7.13□□□□□ -1.27
PCDH1-206ENST00000511044 PRLHP81277 87 aa7.13□□□□□ -1.27
PCDH1-206ENST00000511044 SACSQ9NZJ4 4579 aa7.13□□□□□ -1.27
PCDH1-206ENST00000511044 WWC2-AS2Q96NR7 200 aa7.12□□□□□ -1.27
PCDH1-206ENST00000511044 IGKV2-24A0A0C4DH68 120 aa7.12□□□□□ -1.27
PCDH1-206ENST00000511044 IGLV7-46A0A075B6I9 117 aa7.09□□□□□ -1.27
PCDH1-206ENST00000511044 A0A096LNI7 61 aa7.08□□□□□ -1.28
PCDH1-206ENST00000511044 NBDYA0A0U1RRE5 68 aa7.08□□□□□ -1.28
PCDH1-206ENST00000511044 DNAH6Q9C0G6 4158 aa7.08□□□□□ -1.28
PCDH1-206ENST00000511044 C8orf17Q9NRJ1 99 aa7.08□□□□□ -1.28
PCDH1-206ENST00000511044 A8MWP4 228 aa7.07□□□□□ -1.28
PCDH1-206ENST00000511044 LUZP6Q538Z0 58 aa7.07□□□□□ -1.28
PCDH1-206ENST00000511044 HECTD4Q9Y4D8 3996 aa7.07□□□□□ -1.28
PCDH1-206ENST00000511044 PCOTHQ58A44 107 aa7.06□□□□□ -1.28
PCDH1-206ENST00000511044 IGLV8-61A0A075B6I0 122 aa7.04□□□□□ -1.28
PCDH1-206ENST00000511044 PKHD1P08F94 4074 aa7.03□□□□□ -1.28
PCDH1-206ENST00000511044 ALMS1Q8TCU4 4167 aa7.02□□□□□ -1.29
PCDH1-206ENST00000511044 DNAH17Q9UFH2 4485 aa7.02□□□□□ -1.29
PCDH1-206ENST00000511044 LINC00483Q53H64 154 aa7.02□□□□□ -1.29
PCDH1-206ENST00000511044 DNAH11Q96DT5 4516 aa7□□□□□ -1.29
PCDH1-206ENST00000511044 FAT2Q9NYQ8 4349 aa7□□□□□ -1.29
PCDH1-206ENST00000511044 SRRM2Q9UQ35 2752 aaKnown RBP7□□□□□ -1.29
PCDH1-206ENST00000511044 KRTAP11-1Q8IUC1 163 aa7□□□□□ -1.29
PCDH1-206ENST00000511044 C20orf166-AS1Q96NR2 134 aa7□□□□□ -1.29
PCDH1-206ENST00000511044 DNAH5Q8TE73 4624 aa6.98□□□□□ -1.29
PCDH1-206ENST00000511044 Q6ZRN7 208 aaPredicted RBP6.98□□□□□ -1.29
PCDH1-206ENST00000511044 KRTAP25-1Q3LHN0 102 aa6.98□□□□□ -1.29
PCDH1-206ENST00000511044 LINC00472Q9H8W2 130 aa6.97□□□□□ -1.29
PCDH1-206ENST00000511044 RYR3Q15413 4870 aa6.97□□□□□ -1.29
PCDH1-206ENST00000511044 MMP24-AS1A0A0U1RRL7 71 aa6.96□□□□□ -1.29
PCDH1-206ENST00000511044 HRES1P13985 223 aa6.96□□□□□ -1.29
PCDH1-206ENST00000511044 RYR2Q92736 4967 aa6.96□□□□□ -1.3
PCDH1-206ENST00000511044 SPRR1BP22528 89 aa6.95□□□□□ -1.3
PCDH1-206ENST00000511044 NDUFAF8A1L188 74 aa6.94□□□□□ -1.3
PCDH1-206ENST00000511044 K7ERS5 55 aa6.94□□□□□ -1.3
PCDH1-206ENST00000511044 SPATA8Q6RVD6 105 aa6.94□□□□□ -1.3
PCDH1-206ENST00000511044 PKD1P98161 4303 aa6.93□□□□□ -1.3
PCDH1-206ENST00000511044 C14orf177Q52M58 125 aa6.93□□□□□ -1.3
PCDH1-206ENST00000511044 DNAH8Q96JB1 4490 aa6.92□□□□□ -1.3
PCDH1-206ENST00000511044 A0A087WTM6 91 aa6.92□□□□□ -1.3
PCDH1-206ENST00000511044 PANO1I0J062 215 aa6.91□□□□□ -1.3
PCDH1-206ENST00000511044 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.91□□□□□ -1.3
PCDH1-206ENST00000511044 TP53AIP1Q9HCN2 124 aa6.9□□□□□ -1.31
PCDH1-206ENST00000511044 ZNF861PO60384 105 aa6.88□□□□□ -1.31
PCDH1-206ENST00000511044 KRTAP10-2P60368 255 aa6.88□□□□□ -1.31
PCDH1-206ENST00000511044 IGLV5-52A0A0A0MRZ9 124 aa6.84□□□□□ -1.31
PCDH1-206ENST00000511044 KRTAP13-1Q8IUC0 172 aa6.83□□□□□ -1.32
PCDH1-206ENST00000511044 LRP1BQ9NZR2 4599 aa6.83□□□□□ -1.32
PCDH1-206ENST00000511044 A8MUU9 505 aa6.83□□□□□ -1.32
PCDH1-206ENST00000511044 Q96NJ1 140 aa6.83□□□□□ -1.32
PCDH1-206ENST00000511044 DYNC1H1Q14204 4646 aaKnown RBP6.81□□□□□ -1.32
PCDH1-206ENST00000511044 UQCR11O14957 56 aa6.8□□□□□ -1.32
PCDH1-206ENST00000511044 CIRBP-AS1Q8TBR5 109 aa6.78□□□□□ -1.32
PCDH1-206ENST00000511044 A0A1B0GVX0 72 aa6.77□□□□□ -1.33
PCDH1-206ENST00000511044 SPACA4Q8TDM5 124 aa6.77□□□□□ -1.33
PCDH1-206ENST00000511044 DMAC1Q96GE9 116 aa6.76□□□□□ -1.33
PCDH1-206ENST00000511044 ANAPC11Q9NYG5 84 aa6.76□□□□□ -1.33
PCDH1-206ENST00000511044 FAT1Q14517 4588 aa6.76□□□□□ -1.33
PCDH1-206ENST00000511044 MRPL34Q9BQ48 92 aaKnown RBP6.76□□□□□ -1.33
PCDH1-206ENST00000511044 A0A1B0GU69 56 aa6.75□□□□□ -1.33
PCDH1-206ENST00000511044 ACYP2P14621 99 aa6.75□□□□□ -1.33
PCDH1-206ENST00000511044 KRTAP10-1P60331 282 aa6.74□□□□□ -1.33
PCDH1-206ENST00000511044 VPS13BQ7Z7G8 4022 aa6.74□□□□□ -1.33
PCDH1-206ENST00000511044 EPPK1P58107 5090 aaKnown RBP6.73□□□□□ -1.33
PCDH1-206ENST00000511044 PSORS1C2Q9UIG4 136 aa6.72□□□□□ -1.33
PCDH1-206ENST00000511044 Q5W150 140 aa6.71□□□□□ -1.34
PCDH1-206ENST00000511044 SPINK6Q6UWN8 80 aa6.7□□□□□ -1.34
PCDH1-206ENST00000511044 APOBP04114 4563 aaKnown RBP6.7□□□□□ -1.34
PCDH1-206ENST00000511044 KRTAP15-1Q3LI76 137 aa6.66□□□□□ -1.34
PCDH1-206ENST00000511044 SPINT4Q6UDR6 99 aa6.66□□□□□ -1.34
PCDH1-206ENST00000511044 SMR3BP02814 79 aaPredicted RBP6.65□□□□□ -1.35
PCDH1-206ENST00000511044 KIAA1109Q2LD37 5005 aa6.65□□□□□ -1.35
PCDH1-206ENST00000511044 KRTAP13-3Q3SY46 172 aa6.64□□□□□ -1.35
PCDH1-206ENST00000511044 A0A1B0GVY2 172 aa6.63□□□□□ -1.35
PCDH1-206ENST00000511044 Q6ZSA8 131 aa6.59□□□□□ -1.35
PCDH1-206ENST00000511044 IGLV7-43P04211 117 aa6.58□□□□□ -1.36
PCDH1-206ENST00000511044 HSPG2P98160 4391 aa6.58□□□□□ -1.36
PCDH1-206ENST00000511044 FLG2Q5D862 2391 aaPredicted RBP6.57□□□□□ -1.36
PCDH1-206ENST00000511044 FAM229AH3BQW9 127 aa6.54□□□□□ -1.36
PCDH1-206ENST00000511044 CAMK2N1Q7Z7J9 78 aa6.54□□□□□ -1.36
PCDH1-206ENST00000511044 SSBP3-AS1Q7Z2R9 100 aa6.53□□□□□ -1.36
PCDH1-206ENST00000511044 RYR1P21817 5038 aa6.52□□□□□ -1.37
PCDH1-206ENST00000511044 LINC00304Q8N9R0 145 aa6.52□□□□□ -1.37
PCDH1-206ENST00000511044 LRP1Q07954 4544 aaKnown RBP6.51□□□□□ -1.37
PCDH1-206ENST00000511044 MYCBP2O75592 4640 aa6.51□□□□□ -1.37
PCDH1-206ENST00000511044 IGKV2-30P06310 120 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms