RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 ZNF625Q96I27 306 aaPredicted RBP5.86□□□□□ -1.47
USP53-207ENST00000510852 NDUFA1O15239 70 aa5.85□□□□□ -1.47
USP53-207ENST00000510852 LITAFQ99732 161 aa5.85□□□□□ -1.47
USP53-207ENST00000510852 RYR3Q15413 4870 aa5.85□□□□□ -1.47
USP53-207ENST00000510852 LINC01558Q9Y6Z2 57 aa5.85□□□□□ -1.47
USP53-207ENST00000510852 UNQ6190/PRO20217Q6UXQ8 127 aa5.84□□□□□ -1.47
USP53-207ENST00000510852 DMAC1Q96GE9 116 aa5.84□□□□□ -1.47
USP53-207ENST00000510852 A0A087WTM6 91 aa5.84□□□□□ -1.48
USP53-207ENST00000510852 SPINK7P58062 85 aa5.84□□□□□ -1.48
USP53-207ENST00000510852 CNBPP62633 177 aaKnown RBP5.84□□□□□ -1.48
USP53-207ENST00000510852 C14orf177Q52M58 125 aa5.84□□□□□ -1.48
USP53-207ENST00000510852 DNAH5Q8TE73 4624 aa5.83□□□□□ -1.48
USP53-207ENST00000510852 A0A1B0GU33 70 aa5.83□□□□□ -1.48
USP53-207ENST00000510852 SLPIP03973 132 aa5.83□□□□□ -1.48
USP53-207ENST00000510852 UBL5Q9BZL1 73 aa5.83□□□□□ -1.48
USP53-207ENST00000510852 C6orf48Q9UBA6 75 aa5.82□□□□□ -1.48
USP53-207ENST00000510852 PKD1P98161 4303 aa5.81□□□□□ -1.48
USP53-207ENST00000510852 IGLV7-43P04211 117 aa5.81□□□□□ -1.48
USP53-207ENST00000510852 HIGD2AQ9BW72 106 aa5.8□□□□□ -1.48
USP53-207ENST00000510852 LINC00208Q96KT6 92 aa5.8□□□□□ -1.48
USP53-207ENST00000510852 LINC00158P58513 81 aa5.79□□□□□ -1.48
USP53-207ENST00000510852 DEFB116Q30KQ4 102 aa5.79□□□□□ -1.48
USP53-207ENST00000510852 Q5W150 140 aa5.78□□□□□ -1.48
USP53-207ENST00000510852 COX17Q14061 63 aa5.78□□□□□ -1.48
USP53-207ENST00000510852 DNAH8Q96JB1 4490 aa5.77□□□□□ -1.49
USP53-207ENST00000510852 NDUFB1O75438 58 aa5.77□□□□□ -1.49
USP53-207ENST00000510852 ZCCHC13Q8WW36 166 aaKnown RBP5.77□□□□□ -1.49
USP53-207ENST00000510852 TYMSOSQ8TAI1 123 aa5.76□□□□□ -1.49
USP53-207ENST00000510852 KRTAP10-2P60368 255 aa5.75□□□□□ -1.49
USP53-207ENST00000510852 PKHD1P08F94 4074 aa5.75□□□□□ -1.49
USP53-207ENST00000510852 KRTAP15-1Q3LI76 137 aa5.74□□□□□ -1.49
USP53-207ENST00000510852 LINC00308Q8TCZ7 52 aa5.74□□□□□ -1.49
USP53-207ENST00000510852 DYNC1H1Q14204 4646 aaKnown RBP5.74□□□□□ -1.49
USP53-207ENST00000510852 KRTAP3-1Q9BYR8 98 aa5.74□□□□□ -1.49
USP53-207ENST00000510852 LRP1BQ9NZR2 4599 aa5.74□□□□□ -1.49
USP53-207ENST00000510852 A0A096LNI7 61 aa5.72□□□□□ -1.49
USP53-207ENST00000510852 IGKV2-24A0A0C4DH68 120 aa5.71□□□□□ -1.5
USP53-207ENST00000510852 A0A1B0GVY2 172 aa5.71□□□□□ -1.5
USP53-207ENST00000510852 H0Y9P7 68 aa5.71□□□□□ -1.5
USP53-207ENST00000510852 FAM168BA1KXE4 195 aa5.7□□□□□ -1.5
USP53-207ENST00000510852 SPRR4Q96PI1 79 aa5.69□□□□□ -1.5
USP53-207ENST00000510852 ST20-AS1Q8NBB2 130 aa5.68□□□□□ -1.5
USP53-207ENST00000510852 KRTAP10-1P60331 282 aa5.67□□□□□ -1.5
USP53-207ENST00000510852 KRTAP7-1Q8IUC3 87 aa5.67□□□□□ -1.5
USP53-207ENST00000510852 SPACA4Q8TDM5 124 aa5.67□□□□□ -1.5
USP53-207ENST00000510852 IGKV2-28A0A075B6P5 120 aa5.66□□□□□ -1.5
USP53-207ENST00000510852 A0A1W2PNN7 141 aa5.66□□□□□ -1.5
USP53-207ENST00000510852 NCR3O14931 201 aa5.66□□□□□ -1.5
USP53-207ENST00000510852 ZNF861PO60384 105 aa5.66□□□□□ -1.5
USP53-207ENST00000510852 IGKV2D-28P01615 120 aa5.66□□□□□ -1.5
USP53-207ENST00000510852 APOBP04114 4563 aaKnown RBP5.66□□□□□ -1.5
USP53-207ENST00000510852 UQCR11O14957 56 aa5.65□□□□□ -1.5
USP53-207ENST00000510852 SPATA8Q6RVD6 105 aa5.65□□□□□ -1.5
USP53-207ENST00000510852 JMJD7-PLA2G4BH0Y9G9 81 aa5.64□□□□□ -1.51
USP53-207ENST00000510852 LORP23490 312 aaPredicted RBP5.64□□□□□ -1.51
USP53-207ENST00000510852 A0A087WYN8 130 aa5.64□□□□□ -1.51
USP53-207ENST00000510852 PDE6GP18545 87 aa5.63□□□□□ -1.51
USP53-207ENST00000510852 Q6ZSA8 131 aa5.63□□□□□ -1.51
USP53-207ENST00000510852 EPPK1P58107 5090 aaKnown RBP5.63□□□□□ -1.51
USP53-207ENST00000510852 SPINT4Q6UDR6 99 aa5.63□□□□□ -1.51
USP53-207ENST00000510852 IGLV6-57P01721 117 aa5.61□□□□□ -1.51
USP53-207ENST00000510852 HAMPP81172 84 aa5.6□□□□□ -1.51
USP53-207ENST00000510852 SMIM11BQ8TCY0 68 aa5.58□□□□□ -1.52
USP53-207ENST00000510852 KRTAP11-1Q8IUC1 163 aa5.57□□□□□ -1.52
USP53-207ENST00000510852 KCNQ1DNQ9H478 68 aa5.57□□□□□ -1.52
USP53-207ENST00000510852 VPS13BQ7Z7G8 4022 aa5.57□□□□□ -1.52
USP53-207ENST00000510852 FAT1Q14517 4588 aa5.56□□□□□ -1.52
USP53-207ENST00000510852 HSPG2P98160 4391 aa5.56□□□□□ -1.52
USP53-207ENST00000510852 LINC00472Q9H8W2 130 aa5.56□□□□□ -1.52
USP53-207ENST00000510852 R4GN34 69 aa5.56□□□□□ -1.52
USP53-207ENST00000510852 RYR1P21817 5038 aa5.55□□□□□ -1.52
USP53-207ENST00000510852 COA5Q86WW8 74 aa5.55□□□□□ -1.52
USP53-207ENST00000510852 PRO2289Q9P1D8 64 aa5.55□□□□□ -1.52
USP53-207ENST00000510852 SPRR1AP35321 89 aa5.54□□□□□ -1.52
USP53-207ENST00000510852 PSORS1C2Q9UIG4 136 aa5.53□□□□□ -1.52
USP53-207ENST00000510852 ETDCA0A1B0GVM5 59 aa5.52□□□□□ -1.53
USP53-207ENST00000510852 COX7BP24311 80 aa5.51□□□□□ -1.53
USP53-207ENST00000510852 KIAA1109Q2LD37 5005 aa5.5□□□□□ -1.53
USP53-207ENST00000510852 H0YGX0 51 aa5.5□□□□□ -1.53
USP53-207ENST00000510852 SMR3BP02814 79 aaPredicted RBP5.5□□□□□ -1.53
USP53-207ENST00000510852 BIRC6Q9NR09 4857 aa5.49□□□□□ -1.53
USP53-207ENST00000510852 PRLHP81277 87 aa5.49□□□□□ -1.53
USP53-207ENST00000510852 Q6ZRX8 168 aa5.49□□□□□ -1.53
USP53-207ENST00000510852 Q96NJ1 140 aa5.48□□□□□ -1.53
USP53-207ENST00000510852 LINC00575Q6W349 94 aa5.48□□□□□ -1.53
USP53-207ENST00000510852 LINC00304Q8N9R0 145 aa5.48□□□□□ -1.53
USP53-207ENST00000510852 LOC110117498A0A087WWA1 95 aa5.47□□□□□ -1.53
USP53-207ENST00000510852 KRTAP13-1Q8IUC0 172 aa5.47□□□□□ -1.53
USP53-207ENST00000510852 IGKV4-1P06312 121 aa5.46□□□□□ -1.54
USP53-207ENST00000510852 RPL37AP61513 92 aaKnown RBP5.46□□□□□ -1.54
USP53-207ENST00000510852 SRRM2Q9UQ35 2752 aaKnown RBP5.44□□□□□ -1.54
USP53-207ENST00000510852 PKHD1L1Q86WI1 4243 aa5.44□□□□□ -1.54
USP53-207ENST00000510852 A0A0G2JQZ4 141 aa5.43□□□□□ -1.54
USP53-207ENST00000510852 KRTAP10-4P60372 401 aaPredicted RBP5.42□□□□□ -1.54
USP53-207ENST00000510852 Q6ZQY7 126 aa5.42□□□□□ -1.54
USP53-207ENST00000510852 TPRXLQ17RH7 258 aa5.4□□□□□ -1.54
USP53-207ENST00000510852 KRTAP17-1Q9BYP8 105 aa5.4□□□□□ -1.54
USP53-207ENST00000510852 A0A1B0GU69 56 aa5.4□□□□□ -1.55
USP53-207ENST00000510852 Q5VSD8 79 aa5.4□□□□□ -1.55
USP53-207ENST00000510852 DEFB105AQ8NG35 78 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms