RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 C8orf17Q9NRJ1 99 aa6.65□□□□□ -1.34
MSH5-SAPCD1-207ENST00000493662 CNBPP62633 177 aaKnown RBP6.65□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 SPACA4Q8TDM5 124 aa6.64□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 KRTAP7-1Q8IUC3 87 aa6.64□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 LCE6AA0A183 80 aa6.63□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 IGKV2D-30A0A075B6S6 120 aa6.62□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 IGKV2-30P06310 120 aa6.62□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 MEGF8Q7Z7M0 2845 aa6.62□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 KRTAP10-2P60368 255 aa6.61□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 ANK2Q01484 3957 aa6.61□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 HRES1P13985 223 aa6.6□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 PLA2G2DQ9UNK4 145 aa6.6□□□□□ -1.35
MSH5-SAPCD1-207ENST00000493662 CSAG1Q6PB30 78 aa6.59□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVX0 72 aa6.57□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 ZNF861PO60384 105 aa6.56□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 MMP24-AS1A0A0U1RRL7 71 aa6.55□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 PLA2G1BP04054 148 aaKnown RBP6.55□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 ADM2Q7Z4H4 148 aa6.54□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 IGLV5-37A0A075B6J1 123 aa6.53□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 KRTAP29-1A8MX34 341 aaPredicted RBP6.53□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 SPRR1AP35321 89 aa6.53□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 SSBP3-AS1Q7Z2R9 100 aa6.53□□□□□ -1.36
MSH5-SAPCD1-207ENST00000493662 SPINT4Q6UDR6 99 aa6.52□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 IGLV7-43P04211 117 aa6.51□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 LINC00472Q9H8W2 130 aa6.5□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 KRTAP4-16G5E9R7 235 aaPredicted RBP6.5□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 FAM229AH3BQW9 127 aa6.5□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 Q6ZRN7 208 aaPredicted RBP6.5□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 KRTAP10-1P60331 282 aa6.5□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 TYMSOSQ8TAI1 123 aa6.49□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 CMYA5Q8N3K9 4069 aa6.47□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 DNHD1Q96M86 4753 aa6.46□□□□□ -1.37
MSH5-SAPCD1-207ENST00000493662 Q6ZR54 194 aa6.45□□□□□ -1.38
MSH5-SAPCD1-207ENST00000493662 HUWE1Q7Z6Z7 4374 aaKnown RBP6.42□□□□□ -1.38
MSH5-SAPCD1-207ENST00000493662 C9orf92A6NGG3 77 aa6.42□□□□□ -1.38
MSH5-SAPCD1-207ENST00000493662 ASB16-AS1Q495Z4 193 aa6.4□□□□□ -1.38
MSH5-SAPCD1-207ENST00000493662 PLAC8Q9NZF1 115 aa6.4□□□□□ -1.38
MSH5-SAPCD1-207ENST00000493662 DNAH1Q9P2D7 4330 aa6.4□□□□□ -1.38
MSH5-SAPCD1-207ENST00000493662 Q96NJ1 140 aa6.38□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 DNAH3Q8TD57 4116 aa6.37□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 A0A087X002 238 aa6.37□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 LYSTQ99698 3801 aa6.37□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 DNAH10Q8IVF4 4471 aa6.36□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 SPATA8Q6RVD6 105 aa6.36□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 CRIPTQ9P021 101 aa6.35□□□□□ -1.39
MSH5-SAPCD1-207ENST00000493662 SPRR1BP22528 89 aa6.33□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 NOTCH2NLQ7Z3S9 236 aa6.33□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 Q8N1X5 172 aa6.33□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 LINC00304Q8N9R0 145 aa6.31□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 DMAC1Q96GE9 116 aa6.3□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 PRKDCP78527 4128 aaKnown RBP6.29□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 PLECQ15149 4684 aaKnown RBP6.29□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 Q5W150 140 aa6.29□□□□□ -1.4
MSH5-SAPCD1-207ENST00000493662 DNAH9Q9NYC9 4486 aa6.27□□□□□ -1.41
MSH5-SAPCD1-207ENST00000493662 A0A1B0GU33 70 aa6.26□□□□□ -1.41
MSH5-SAPCD1-207ENST00000493662 KRTAP13-1Q8IUC0 172 aa6.23□□□□□ -1.41
MSH5-SAPCD1-207ENST00000493662 DNAH7Q8WXX0 4024 aa6.22□□□□□ -1.41
MSH5-SAPCD1-207ENST00000493662 ROMO1P60602 79 aa6.21□□□□□ -1.42
MSH5-SAPCD1-207ENST00000493662 KRTAP25-1Q3LHN0 102 aa6.21□□□□□ -1.42
MSH5-SAPCD1-207ENST00000493662 STARD9Q9P2P6 4700 aa6.2□□□□□ -1.42
MSH5-SAPCD1-207ENST00000493662 KRTAP13-2Q52LG2 175 aa6.19□□□□□ -1.42
MSH5-SAPCD1-207ENST00000493662 A0A0D9SG42 100 aa6.18□□□□□ -1.42
MSH5-SAPCD1-207ENST00000493662 LINC00483Q53H64 154 aa6.16□□□□□ -1.42
MSH5-SAPCD1-207ENST00000493662 KMT2AQ03164 3969 aa6.15□□□□□ -1.43
MSH5-SAPCD1-207ENST00000493662 Q5VSD8 79 aa6.14□□□□□ -1.43
MSH5-SAPCD1-207ENST00000493662 DNAH11Q96DT5 4516 aa6.1□□□□□ -1.43
MSH5-SAPCD1-207ENST00000493662 J3QL48 77 aa6.07□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 DYNC2H1Q8NCM8 4307 aaKnown RBP6.07□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 NDUFAF8A1L188 74 aa6.07□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 KRTAP16-1A8MUX0 517 aa6.07□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 A8MUU9 505 aa6.07□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 H1FX-AS1Q4G0G2 97 aa6.04□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 Q6ZSA8 131 aa6.04□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 KRTAP1-4P0C5Y4 121 aa6.03□□□□□ -1.44
MSH5-SAPCD1-207ENST00000493662 KRTAP21-3Q3LHN1 58 aa6.02□□□□□ -1.45
MSH5-SAPCD1-207ENST00000493662 FRAS1Q86XX4 4008 aa6.02□□□□□ -1.45
MSH5-SAPCD1-207ENST00000493662 HECTD4Q9Y4D8 3996 aa6.01□□□□□ -1.45
MSH5-SAPCD1-207ENST00000493662 RPL37P61927 97 aaKnown RBP6□□□□□ -1.45
MSH5-SAPCD1-207ENST00000493662 FAT1Q14517 4588 aa5.98□□□□□ -1.45
MSH5-SAPCD1-207ENST00000493662 A0A0A0MQY5 61 aa5.95□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 DNAH8Q96JB1 4490 aa5.94□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 DNAH5Q8TE73 4624 aa5.93□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 VPS13DQ5THJ4 4388 aa5.93□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 LUZP6Q538Z0 58 aa5.92□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 DNAH2Q9P225 4427 aa5.92□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 LRP1BQ9NZR2 4599 aa5.9□□□□□ -1.46
MSH5-SAPCD1-207ENST00000493662 H0YAA0 97 aa5.9□□□□□ -1.47
MSH5-SAPCD1-207ENST00000493662 C20orf166-AS1Q96NR2 134 aa5.9□□□□□ -1.47
MSH5-SAPCD1-207ENST00000493662 DNAH6Q9C0G6 4158 aa5.89□□□□□ -1.47
MSH5-SAPCD1-207ENST00000493662 HYDINQ4G0P3 5121 aa5.89□□□□□ -1.47
MSH5-SAPCD1-207ENST00000493662 DNAH17Q9UFH2 4485 aa5.89□□□□□ -1.47
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVY2 172 aa5.83□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 COX6B2Q6YFQ2 88 aa5.83□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 ALMS1Q8TCU4 4167 aa5.83□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 KRTAP13-3Q3SY46 172 aa5.82□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 C10orf95Q9H7T3 257 aa5.8□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 MYCBP2O75592 4640 aa5.79□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 PKHD1P08F94 4074 aa5.79□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 KIAA1109Q2LD37 5005 aa5.79□□□□□ -1.48
MSH5-SAPCD1-207ENST00000493662 KMT2CQ8NEZ4 4911 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms