RNA–Protein interactions for RNA: ENST00000488765.1

MCF2L-229, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2

Gene MCF2L, Length 3,205 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-229ENST00000488765 Q96NJ1 140 aa9.72□□□□□ -0.85
MCF2L-229ENST00000488765 RTL8CO15255 209 aa9.71□□□□□ -0.85
MCF2L-229ENST00000488765 MIR22HGQ0VDD5 57 aa9.71□□□□□ -0.86
MCF2L-229ENST00000488765 DNAH10OSP0CZ25 163 aa9.7□□□□□ -0.86
MCF2L-229ENST00000488765 MRPL34Q9BQ48 92 aaKnown RBP9.7□□□□□ -0.86
MCF2L-229ENST00000488765 KRTAP1-5Q9BYS1 174 aa9.69□□□□□ -0.86
MCF2L-229ENST00000488765 ACYP2P14621 99 aa9.67□□□□□ -0.86
MCF2L-229ENST00000488765 A0A1B0GVX0 72 aa9.66□□□□□ -0.86
MCF2L-229ENST00000488765 ZNF706Q9Y5V0 76 aaPredicted RBP9.65□□□□□ -0.86
MCF2L-229ENST00000488765 C1orf134Q5TEV5 83 aa9.65□□□□□ -0.87
MCF2L-229ENST00000488765 CRIPTQ9P021 101 aa9.63□□□□□ -0.87
MCF2L-229ENST00000488765 SPINK1P00995 79 aa9.61□□□□□ -0.87
MCF2L-229ENST00000488765 PANO1I0J062 215 aa9.61□□□□□ -0.87
MCF2L-229ENST00000488765 FRAS1Q86XX4 4008 aa9.61□□□□□ -0.87
MCF2L-229ENST00000488765 DNAH7Q8WXX0 4024 aa9.6□□□□□ -0.87
MCF2L-229ENST00000488765 UQCR11O14957 56 aa9.6□□□□□ -0.87
MCF2L-229ENST00000488765 SPATA8Q6RVD6 105 aa9.6□□□□□ -0.87
MCF2L-229ENST00000488765 ASB16-AS1Q495Z4 193 aa9.59□□□□□ -0.87
MCF2L-229ENST00000488765 DMBT1Q9UGM3 2413 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-229ENST00000488765 MEGF8Q7Z7M0 2845 aa9.57□□□□□ -0.88
MCF2L-229ENST00000488765 DNAH9Q9NYC9 4486 aa9.56□□□□□ -0.88
MCF2L-229ENST00000488765 SPRR1BP22528 89 aa9.54□□□□□ -0.88
MCF2L-229ENST00000488765 DNAH3Q8TD57 4116 aa9.54□□□□□ -0.88
MCF2L-229ENST00000488765 DNHD1Q96M86 4753 aa9.53□□□□□ -0.88
MCF2L-229ENST00000488765 DNAH1Q9P2D7 4330 aa9.52□□□□□ -0.88
MCF2L-229ENST00000488765 PLECQ15149 4684 aaKnown RBP9.5□□□□□ -0.89
MCF2L-229ENST00000488765 PRKDCP78527 4128 aaKnown RBP9.49□□□□□ -0.89
MCF2L-229ENST00000488765 ALMS1Q8TCU4 4167 aa9.48□□□□□ -0.89
MCF2L-229ENST00000488765 ZNF861PO60384 105 aa9.48□□□□□ -0.89
MCF2L-229ENST00000488765 APLNQ9ULZ1 77 aa9.48□□□□□ -0.89
MCF2L-229ENST00000488765 IGKV2D-30A0A075B6S6 120 aa9.47□□□□□ -0.89
MCF2L-229ENST00000488765 IGKV2-30P06310 120 aa9.47□□□□□ -0.89
MCF2L-229ENST00000488765 CIRBP-AS1Q8TBR5 109 aa9.47□□□□□ -0.89
MCF2L-229ENST00000488765 DMAC1Q96GE9 116 aa9.45□□□□□ -0.9
MCF2L-229ENST00000488765 FBN3Q75N90 2809 aa9.42□□□□□ -0.9
MCF2L-229ENST00000488765 KRTAP13-3Q3SY46 172 aa9.41□□□□□ -0.9
MCF2L-229ENST00000488765 NBDYA0A0U1RRE5 68 aa9.4□□□□□ -0.91
MCF2L-229ENST00000488765 KMT2AQ03164 3969 aa9.4□□□□□ -0.91
MCF2L-229ENST00000488765 STARD9Q9P2P6 4700 aa9.39□□□□□ -0.91
MCF2L-229ENST00000488765 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.39□□□□□ -0.91
MCF2L-229ENST00000488765 ROMO1P60602 79 aa9.38□□□□□ -0.91
MCF2L-229ENST00000488765 LY6G6CO95867 125 aa9.37□□□□□ -0.91
MCF2L-229ENST00000488765 WWC2-AS2Q96NR7 200 aa9.37□□□□□ -0.91
MCF2L-229ENST00000488765 KRTAP13-1Q8IUC0 172 aa9.35□□□□□ -0.91
MCF2L-229ENST00000488765 Q8N1X5 172 aa9.34□□□□□ -0.91
MCF2L-229ENST00000488765 C14orf177Q52M58 125 aa9.34□□□□□ -0.91
MCF2L-229ENST00000488765 NUPR2A6NF83 97 aa9.32□□□□□ -0.92
MCF2L-229ENST00000488765 DNAH8Q96JB1 4490 aa9.31□□□□□ -0.92
MCF2L-229ENST00000488765 KRTAP25-1Q3LHN0 102 aa9.29□□□□□ -0.92
MCF2L-229ENST00000488765 PSORS1C2Q9UIG4 136 aa9.29□□□□□ -0.92
MCF2L-229ENST00000488765 IGLV7-43P04211 117 aa9.27□□□□□ -0.93
MCF2L-229ENST00000488765 LINC00304Q8N9R0 145 aa9.26□□□□□ -0.93
MCF2L-229ENST00000488765 DNAH17Q9UFH2 4485 aa9.26□□□□□ -0.93
MCF2L-229ENST00000488765 A8MUU9 505 aa9.25□□□□□ -0.93
MCF2L-229ENST00000488765 SSBP3-AS1Q7Z2R9 100 aa9.25□□□□□ -0.93
MCF2L-229ENST00000488765 IGLV5-52A0A0A0MRZ9 124 aa9.24□□□□□ -0.93
MCF2L-229ENST00000488765 P0C880 135 aa9.24□□□□□ -0.93
MCF2L-229ENST00000488765 FAM229AH3BQW9 127 aa9.22□□□□□ -0.93
MCF2L-229ENST00000488765 A0A087WTM6 91 aa9.22□□□□□ -0.93
MCF2L-229ENST00000488765 H0YAA0 97 aa9.22□□□□□ -0.93
MCF2L-229ENST00000488765 Q6ZRN7 208 aaPredicted RBP9.2□□□□□ -0.94
MCF2L-229ENST00000488765 Q6ZSA8 131 aa9.2□□□□□ -0.94
MCF2L-229ENST00000488765 LINC00483Q53H64 154 aa9.19□□□□□ -0.94
MCF2L-229ENST00000488765 TYMSOSQ8TAI1 123 aa9.18□□□□□ -0.94
MCF2L-229ENST00000488765 VPS13DQ5THJ4 4388 aa9.14□□□□□ -0.95
MCF2L-229ENST00000488765 SPACA4Q8TDM5 124 aa9.12□□□□□ -0.95
MCF2L-229ENST00000488765 DNAH2Q9P225 4427 aa9.11□□□□□ -0.95
MCF2L-229ENST00000488765 DNAH6Q9C0G6 4158 aa9.09□□□□□ -0.95
MCF2L-229ENST00000488765 SPINT4Q6UDR6 99 aa9.08□□□□□ -0.96
MCF2L-229ENST00000488765 KRTAP16-1A8MUX0 517 aa9.07□□□□□ -0.96
MCF2L-229ENST00000488765 KRTAP10-2P60368 255 aa9.07□□□□□ -0.96
MCF2L-229ENST00000488765 DNAH11Q96DT5 4516 aa9.05□□□□□ -0.96
MCF2L-229ENST00000488765 A0A1B0GU33 70 aa9.05□□□□□ -0.96
MCF2L-229ENST00000488765 HECTD4Q9Y4D8 3996 aa9.04□□□□□ -0.96
MCF2L-229ENST00000488765 NDUFAF8A1L188 74 aa9.01□□□□□ -0.97
MCF2L-229ENST00000488765 HYDINQ4G0P3 5121 aa8.99□□□□□ -0.97
MCF2L-229ENST00000488765 A0A0A0MQY5 61 aa8.96□□□□□ -0.97
MCF2L-229ENST00000488765 DYNC2H1Q8NCM8 4307 aaKnown RBP8.96□□□□□ -0.98
MCF2L-229ENST00000488765 C10orf95Q9H7T3 257 aa8.95□□□□□ -0.98
MCF2L-229ENST00000488765 A0A0D9SG42 100 aa8.92□□□□□ -0.98
MCF2L-229ENST00000488765 KRTAP10-1P60331 282 aa8.9□□□□□ -0.99
MCF2L-229ENST00000488765 H1FX-AS1Q4G0G2 97 aa8.9□□□□□ -0.99
MCF2L-229ENST00000488765 KRTAP13-2Q52LG2 175 aa8.88□□□□□ -0.99
MCF2L-229ENST00000488765 SMR3BP02814 79 aaPredicted RBP8.88□□□□□ -0.99
MCF2L-229ENST00000488765 LRP1BQ9NZR2 4599 aa8.87□□□□□ -0.99
MCF2L-229ENST00000488765 K7ERS5 55 aa8.86□□□□□ -0.99
MCF2L-229ENST00000488765 TPRXLQ17RH7 258 aa8.82□□□□□ -1
MCF2L-229ENST00000488765 PKHD1P08F94 4074 aa8.82□□□□□ -1
MCF2L-229ENST00000488765 DNAH5Q8TE73 4624 aa8.81□□□□□ -1
MCF2L-229ENST00000488765 C9orf92A6NGG3 77 aa8.8□□□□□ -1
MCF2L-229ENST00000488765 COX6B2Q6YFQ2 88 aa8.79□□□□□ -1
MCF2L-229ENST00000488765 KRTAP3-1Q9BYR8 98 aa8.76□□□□□ -1.01
MCF2L-229ENST00000488765 C20orf166-AS1Q96NR2 134 aa8.76□□□□□ -1.01
MCF2L-229ENST00000488765 VPS13BQ7Z7G8 4022 aa8.74□□□□□ -1.01
MCF2L-229ENST00000488765 FAT2Q9NYQ8 4349 aa8.72□□□□□ -1.01
MCF2L-229ENST00000488765 FAT1Q14517 4588 aa8.71□□□□□ -1.02
MCF2L-229ENST00000488765 KRTAP13-4Q3LI77 160 aa8.63□□□□□ -1.03
MCF2L-229ENST00000488765 RPL37P61927 97 aaKnown RBP8.61□□□□□ -1.03
MCF2L-229ENST00000488765 KRTAP15-1Q3LI76 137 aa8.6□□□□□ -1.03
MCF2L-229ENST00000488765 KMT2CQ8NEZ4 4911 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms