RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 I3L3M4 83 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 IGLV6-57P01721 117 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 LYZL1Q6UWQ5 148 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 ATP11AUNQ6ZP68 121 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 IFI27L1Q96BM0 104 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 TTTY13Q9BZ97 58 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 TRBV6-5A0A0K0K1A5 114 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 MOBPQ13875 183 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 ATXN8Q156A1 80 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 Q1T7F1 81 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 Q6JHZ5 121 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 C20orf197Q8N268 126 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 SCGB3A1Q96QR1 104 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 HIGD2AQ9BW72 106 aa2.38□□□□□ -2.03
USP4-209ENST00000475873 A0A0B4J2C4 111 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 TRBV10-2A0A0K0K1G8 114 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 SCO2A0A1W2PP80 73 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 SPRR2EP22531 72 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 SPRR2BP35325 72 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 SPRR2AP35326 72 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 POLR2KP53803 58 aaKnown RBP2.37□□□□□ -2.03
USP4-209ENST00000475873 KLKP1Q107X0 134 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 MRPL51Q4U2R6 128 aaKnown RBP2.37□□□□□ -2.03
USP4-209ENST00000475873 ORMDL3Q8N138 153 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 SPTSSBQ8NFR3 76 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 URB1-AS1Q96HZ7 61 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 TIMM21Q9BVV7 248 aa2.37□□□□□ -2.03
USP4-209ENST00000475873 A0A1B0GW54 56 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 F8WEM9 126 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 IFI27P40305 119 aaPredicted RBP2.36□□□□□ -2.03
USP4-209ENST00000475873 LINC00483Q53H64 154 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 ATP5EP2Q5VTU8 51 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 SFTA2Q6UW10 78 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 Q8NDZ9 215 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 TMEM141Q96I45 108 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 SND1-IT1Q9HBX3 110 aa2.36□□□□□ -2.03
USP4-209ENST00000475873 TRAV7A0A075B6U4 112 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 TRBV10-3A0A0K0K1G6 114 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 TEX49A0A1B0GTD5 131 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 PRSS2P07478 247 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 FCER1GP30273 86 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 RPL39P62891 51 aaKnown RBP2.35□□□□□ -2.03
USP4-209ENST00000475873 CNFNQ9BYD5 112 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 PRO1854Q9UHT4 67 aa2.35□□□□□ -2.03
USP4-209ENST00000475873 hDV103S1A0JD37 113 aa2.34□□□□□ -2.03
USP4-209ENST00000475873 LINC01549A6NIU2 74 aa2.34□□□□□ -2.03
USP4-209ENST00000475873 C20orf166-AS1Q96NR2 134 aa2.34□□□□□ -2.03
USP4-209ENST00000475873 KRTAP16-1A8MUX0 517 aa2.33□□□□□ -2.04
USP4-209ENST00000475873 LCE1AQ5T7P2 110 aa2.33□□□□□ -2.04
USP4-209ENST00000475873 LCE5AQ5TCM9 118 aa2.33□□□□□ -2.04
USP4-209ENST00000475873 SSBP3-AS1Q7Z2R9 100 aa2.33□□□□□ -2.04
USP4-209ENST00000475873 Q8N9P0 234 aaPredicted RBP2.33□□□□□ -2.04
USP4-209ENST00000475873 SMCR5Q8TEV8 140 aa2.33□□□□□ -2.04
USP4-209ENST00000475873 CYP4F30PQ9H0H9 118 aa2.33□□□□□ -2.04
USP4-209ENST00000475873 CTXND1A0A1B0GTU2 59 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 TMEM223A0PJW6 202 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 ZNF815PA8K554 130 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 HCG22E2RYF7 251 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 DNAL4O96015 105 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 COX6CP09669 75 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 ZNF22P17026 224 aaPredicted RBP2.32□□□□□ -2.04
USP4-209ENST00000475873 CASC2Q6XLA1 102 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 PRAC1Q96KF2 57 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 TOMM7Q9P0U1 55 aa2.32□□□□□ -2.04
USP4-209ENST00000475873 DSTQ03001 7570 aaKnown RBP2.31□□□□□ -2.04
USP4-209ENST00000475873 K7ERS5 55 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 ERC2-IT1O76042 136 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 TSPEAR-AS2P59090 65 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 SERF2P84101 59 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 Q1RN00 199 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 LUZP6Q538Z0 58 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 Q8IZM0 81 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 SPRR2FQ96RM1 72 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 CDC42SE1Q9NRR8 79 aa2.31□□□□□ -2.04
USP4-209ENST00000475873 TRAV22A0A0B4J277 110 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 A0A0J9YXY3 114 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 A6NED7 52 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 F8VRH5 84 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 CHKB-CPT1BH3BT56 60 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 DHRS4-AS1Q9P1J3 65 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 V9GYV3 84 aa2.3□□□□□ -2.04
USP4-209ENST00000475873 SMIM27A0A1W2PRY6 76 aa2.29□□□□□ -2.04
USP4-209ENST00000475873 SPRR2DP22532 72 aa2.29□□□□□ -2.04
USP4-209ENST00000475873 IGLV4-3A0A075B6K6 122 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 K7EMI3 77 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 MT1BP07438 61 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 Q5VV11 94 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 ADM2Q7Z4H4 148 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 LIMD2Q9BT23 127 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 C8orf17Q9NRJ1 99 aa2.28□□□□□ -2.04
USP4-209ENST00000475873 TRAV23DV6A0A075B6W5 121 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 A0A087WVE0 104 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 IGKV3D-7A0A0C4DH55 119 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 A8MWP4 228 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 PLNP26678 52 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 SPRR1AP35321 89 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 KRTAP10-5P60370 271 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 LCE4AQ5TA78 99 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 SNURFQ9Y675 71 aa2.27□□□□□ -2.05
USP4-209ENST00000475873 AHNAK2Q8IVF2 5795 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms