RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NOTCH2NLQ7Z3S9 236 aa7.15□□□□□ -1.26
MSH6-204ENST00000445503 LOC101927531A0A1B0GV80 90 aa7.15□□□□□ -1.26
MSH6-204ENST00000445503 IGKV2D-30A0A075B6S6 120 aa7.14□□□□□ -1.27
MSH6-204ENST00000445503 IGKV2-30P06310 120 aa7.14□□□□□ -1.27
MSH6-204ENST00000445503 K7ERS5 55 aa7.14□□□□□ -1.27
MSH6-204ENST00000445503 COL7A1Q02388 2944 aa7.13□□□□□ -1.27
MSH6-204ENST00000445503 WWC2-AS2Q96NR7 200 aa7.12□□□□□ -1.27
MSH6-204ENST00000445503 LINC00313P59037 77 aa7.12□□□□□ -1.27
MSH6-204ENST00000445503 SPINK1P00995 79 aa7.11□□□□□ -1.27
MSH6-204ENST00000445503 IGLV7-43P04211 117 aa7.11□□□□□ -1.27
MSH6-204ENST00000445503 ACYP2P14621 99 aa7.1□□□□□ -1.27
MSH6-204ENST00000445503 TGP01266 2768 aa7.1□□□□□ -1.27
MSH6-204ENST00000445503 HRES1P13985 223 aa7.09□□□□□ -1.27
MSH6-204ENST00000445503 Q6ZRN7 208 aaPredicted RBP7.08□□□□□ -1.28
MSH6-204ENST00000445503 KRTAP13-1Q8IUC0 172 aa7.08□□□□□ -1.28
MSH6-204ENST00000445503 DMBT1Q9UGM3 2413 aaPredicted RBP7.07□□□□□ -1.28
MSH6-204ENST00000445503 Q96NJ1 140 aa7.07□□□□□ -1.28
MSH6-204ENST00000445503 A0A1B0GU69 56 aa7.05□□□□□ -1.28
MSH6-204ENST00000445503 Q75L30 129 aa7.05□□□□□ -1.28
MSH6-204ENST00000445503 Q5W150 140 aa7.04□□□□□ -1.28
MSH6-204ENST00000445503 PLAC8Q9NZF1 115 aa7.04□□□□□ -1.28
MSH6-204ENST00000445503 SPINK7P58062 85 aa7.04□□□□□ -1.28
MSH6-204ENST00000445503 LINC00483Q53H64 154 aa7.03□□□□□ -1.28
MSH6-204ENST00000445503 SSBP3-AS1Q7Z2R9 100 aa7.03□□□□□ -1.28
MSH6-204ENST00000445503 FAM229AH3BQW9 127 aa7.02□□□□□ -1.29
MSH6-204ENST00000445503 Q6ZR54 194 aa7.01□□□□□ -1.29
MSH6-204ENST00000445503 CDC42SE1Q9NRR8 79 aa7.01□□□□□ -1.29
MSH6-204ENST00000445503 LINC01558Q9Y6Z2 57 aa7.01□□□□□ -1.29
MSH6-204ENST00000445503 PLA2G1BP04054 148 aaKnown RBP6.97□□□□□ -1.29
MSH6-204ENST00000445503 TYMSOSQ8TAI1 123 aa6.96□□□□□ -1.3
MSH6-204ENST00000445503 KRTAP10-2P60368 255 aa6.94□□□□□ -1.3
MSH6-204ENST00000445503 CSAG1Q6PB30 78 aa6.93□□□□□ -1.3
MSH6-204ENST00000445503 FBN3Q75N90 2809 aa6.93□□□□□ -1.3
MSH6-204ENST00000445503 HUWE1Q7Z6Z7 4374 aaKnown RBP6.91□□□□□ -1.3
MSH6-204ENST00000445503 DNAH10Q8IVF4 4471 aa6.91□□□□□ -1.3
MSH6-204ENST00000445503 Q8N1X5 172 aa6.91□□□□□ -1.3
MSH6-204ENST00000445503 ANK2Q01484 3957 aa6.9□□□□□ -1.3
MSH6-204ENST00000445503 MIR22HGQ0VDD5 57 aa6.9□□□□□ -1.3
MSH6-204ENST00000445503 ASB16-AS1Q495Z4 193 aa6.88□□□□□ -1.31
MSH6-204ENST00000445503 SMR3BP02814 79 aaPredicted RBP6.88□□□□□ -1.31
MSH6-204ENST00000445503 UQCR11O14957 56 aa6.86□□□□□ -1.31
MSH6-204ENST00000445503 KRTAP16-1A8MUX0 517 aa6.86□□□□□ -1.31
MSH6-204ENST00000445503 C9orf92A6NGG3 77 aa6.86□□□□□ -1.31
MSH6-204ENST00000445503 KRTAP10-1P60331 282 aa6.86□□□□□ -1.31
MSH6-204ENST00000445503 MEGF8Q7Z7M0 2845 aa6.83□□□□□ -1.32
MSH6-204ENST00000445503 DMAC1Q96GE9 116 aa6.83□□□□□ -1.32
MSH6-204ENST00000445503 KRTAP13-2Q52LG2 175 aa6.82□□□□□ -1.32
MSH6-204ENST00000445503 A6NN06 94 aa6.81□□□□□ -1.32
MSH6-204ENST00000445503 ADM2Q7Z4H4 148 aa6.8□□□□□ -1.32
MSH6-204ENST00000445503 LINC00304Q8N9R0 145 aa6.8□□□□□ -1.32
MSH6-204ENST00000445503 LUZP6Q538Z0 58 aa6.78□□□□□ -1.32
MSH6-204ENST00000445503 CRIPTQ9P021 101 aa6.78□□□□□ -1.32
MSH6-204ENST00000445503 LYSTQ99698 3801 aa6.73□□□□□ -1.33
MSH6-204ENST00000445503 DNAH9Q9NYC9 4486 aa6.69□□□□□ -1.34
MSH6-204ENST00000445503 KRTAP13-3Q3SY46 172 aa6.69□□□□□ -1.34
MSH6-204ENST00000445503 PLECQ15149 4684 aaKnown RBP6.69□□□□□ -1.34
MSH6-204ENST00000445503 NDUFAF8A1L188 74 aa6.65□□□□□ -1.34
MSH6-204ENST00000445503 SPATA8Q6RVD6 105 aa6.64□□□□□ -1.35
MSH6-204ENST00000445503 KRTAP1-4P0C5Y4 121 aa6.63□□□□□ -1.35
MSH6-204ENST00000445503 CMYA5Q8N3K9 4069 aa6.62□□□□□ -1.35
MSH6-204ENST00000445503 DNAH1Q9P2D7 4330 aa6.58□□□□□ -1.36
MSH6-204ENST00000445503 A0A1B0GU33 70 aa6.58□□□□□ -1.36
MSH6-204ENST00000445503 Q6ZSA8 131 aa6.57□□□□□ -1.36
MSH6-204ENST00000445503 DNAH3Q8TD57 4116 aa6.55□□□□□ -1.36
MSH6-204ENST00000445503 ROMO1P60602 79 aa6.54□□□□□ -1.36
MSH6-204ENST00000445503 DNAH7Q8WXX0 4024 aa6.53□□□□□ -1.36
MSH6-204ENST00000445503 STARD9Q9P2P6 4700 aa6.53□□□□□ -1.36
MSH6-204ENST00000445503 A0A0D9SG42 100 aa6.52□□□□□ -1.37
MSH6-204ENST00000445503 DNAH8Q96JB1 4490 aa6.49□□□□□ -1.37
MSH6-204ENST00000445503 FRAS1Q86XX4 4008 aa6.47□□□□□ -1.37
MSH6-204ENST00000445503 DNAH11Q96DT5 4516 aa6.47□□□□□ -1.37
MSH6-204ENST00000445503 KMT2AQ03164 3969 aa6.46□□□□□ -1.38
MSH6-204ENST00000445503 SEC61BP60468 96 aaKnown RBP6.45□□□□□ -1.38
MSH6-204ENST00000445503 VPS13DQ5THJ4 4388 aa6.44□□□□□ -1.38
MSH6-204ENST00000445503 H1FX-AS1Q4G0G2 97 aa6.44□□□□□ -1.38
MSH6-204ENST00000445503 PRKDCP78527 4128 aaKnown RBP6.43□□□□□ -1.38
MSH6-204ENST00000445503 DNAH17Q9UFH2 4485 aa6.4□□□□□ -1.39
MSH6-204ENST00000445503 H0YAA0 97 aa6.39□□□□□ -1.39
MSH6-204ENST00000445503 COX6B2Q6YFQ2 88 aa6.39□□□□□ -1.39
MSH6-204ENST00000445503 A8MUU9 505 aa6.38□□□□□ -1.39
MSH6-204ENST00000445503 J3QL48 77 aa6.37□□□□□ -1.39
MSH6-204ENST00000445503 RPS29P62273 56 aaKnown RBP6.37□□□□□ -1.39
MSH6-204ENST00000445503 C20orf166-AS1Q96NR2 134 aa6.36□□□□□ -1.39
MSH6-204ENST00000445503 KRTAP25-1Q3LHN0 102 aa6.35□□□□□ -1.39
MSH6-204ENST00000445503 LRP1BQ9NZR2 4599 aa6.34□□□□□ -1.39
MSH6-204ENST00000445503 DNAH2Q9P225 4427 aa6.33□□□□□ -1.4
MSH6-204ENST00000445503 HECTD4Q9Y4D8 3996 aa6.31□□□□□ -1.4
MSH6-204ENST00000445503 KRTAP3-1Q9BYR8 98 aa6.29□□□□□ -1.4
MSH6-204ENST00000445503 DNAH6Q9C0G6 4158 aa6.29□□□□□ -1.4
MSH6-204ENST00000445503 S4R3F8 94 aa6.28□□□□□ -1.4
MSH6-204ENST00000445503 DNHD1Q96M86 4753 aa6.27□□□□□ -1.41
MSH6-204ENST00000445503 RPL37P61927 97 aaKnown RBP6.26□□□□□ -1.41
MSH6-204ENST00000445503 Q5VSD8 79 aa6.26□□□□□ -1.41
MSH6-204ENST00000445503 DYNC2H1Q8NCM8 4307 aaKnown RBP6.25□□□□□ -1.41
MSH6-204ENST00000445503 DNAH5Q8TE73 4624 aa6.2□□□□□ -1.42
MSH6-204ENST00000445503 FAT1Q14517 4588 aa6.17□□□□□ -1.42
MSH6-204ENST00000445503 VPS13BQ7Z7G8 4022 aa6.16□□□□□ -1.42
MSH6-204ENST00000445503 ALMS1Q8TCU4 4167 aa6.13□□□□□ -1.43
MSH6-204ENST00000445503 A0A1B0GVY2 172 aa6.12□□□□□ -1.43
MSH6-204ENST00000445503 XP32Q5T750 250 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms