RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 TCL1BO95988 128 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 PDE6GP18545 87 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 IFI27P40305 119 aaPredicted RBP0.72□□□□□ -2.29
LINC00643-201ENST00000334389 ATXN8Q156A1 80 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 C4orf26Q17RF5 130 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 S100A7L2Q5SY68 101 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 SPANXN1Q5VSR9 72 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 PCP2Q8IVA1 136 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 NHP2Q9NX24 153 aaKnown RBP0.72□□□□□ -2.29
LINC00643-201ENST00000334389 DHRS4-AS1Q9P1J3 65 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 hADV29S1A0JD25 119 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 HIGD1CA8MV81 97 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 H3BP45 60 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 IGKV2-30P06310 120 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 HRES1P13985 223 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 S100A4P26447 101 aaKnown RBP0.72□□□□□ -2.29
LINC00643-201ENST00000334389 MEIG1Q5JSS6 88 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 ATP11AUNQ6ZP68 121 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 SPRR4Q96PI1 79 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 OCR1Q9BZK8 76 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 IGLV4-60A0A075B6I1 120 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 FAM236DA0A1B0GTK5 79 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 SMIM30A4D0T7 59 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 UBE2L6O14933 153 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 HSBP1O75506 76 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 SMR3BP02814 79 aaPredicted RBP0.72□□□□□ -2.29
LINC00643-201ENST00000334389 FAM236CP0DP71 79 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 HINT1P49773 126 aaPredicted RBP0.72□□□□□ -2.29
LINC00643-201ENST00000334389 GNG5P63218 68 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 SPINK9Q5DT21 86 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 KRTAP7-1Q8IUC3 87 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 TYMSOSQ8TAI1 123 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 UBE2WQ96B02 151 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 PAM16Q9Y3D7 125 aa0.72□□□□□ -2.29
LINC00643-201ENST00000334389 COX6CP09669 75 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 PMAIP1Q13794 54 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 LCA10Q71F78 164 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 Q8NBF4 154 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 COX7B2Q8TF08 81 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 OPRPNQ99935 248 aaPredicted RBP0.71□□□□□ -2.3
LINC00643-201ENST00000334389 C10orf95Q9H7T3 257 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 GNG13Q9P2W3 67 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 C6orf48Q9UBA6 75 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 LINC01558Q9Y6Z2 57 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 H3BUT2 72 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 PSPHP1O15172 72 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 CCKP06307 115 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 ZNF56Q15929 161 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 KRTAP20-2Q3LI61 65 aa0.71□□□□□ -2.3
LINC00643-201ENST00000334389 IGHV3-74A0A0B4J1X5 117 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 SCGB1C2P0DMR2 95 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 PSMB2P49721 201 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 HERVK_113P61574 105 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 NPC2P61916 151 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 SPAG11BQ08648 103 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 C9orf129Q5T035 196 aaKnown RBP0.7□□□□□ -2.3
LINC00643-201ENST00000334389 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.7□□□□□ -2.3
LINC00643-201ENST00000334389 C7orf65Q6ZTY9 151 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 KRTAP11-1Q8IUC1 163 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 SCGB3A1Q96QR1 104 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 CDC42SE1Q9NRR8 79 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 PRO1854Q9UHT4 67 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 C8orf87E5RJ46 101 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 SNCGO76070 127 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 DEFB130BP0DP73 79 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 DEFB130AP0DP74 79 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 CKS2P33552 79 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 XCL1P47992 114 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 Q6ZRX8 168 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 MRPL55Q7Z7F7 128 aaKnown RBP0.7□□□□□ -2.3
LINC00643-201ENST00000334389 LINC00269Q8N2A0 174 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 MT1MQ8N339 61 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 A0A096LNI7 61 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 KRTAP16-1A8MUX0 517 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 D6R8Y8 96 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 H0YGX0 51 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 SMKR1H3BMG3 65 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 APELAP0DMC3 54 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 IGHV3-30-3P0DP02 117 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 UBE2BP63146 152 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 Q6ZQT7 251 aa0.7□□□□□ -2.3
LINC00643-201ENST00000334389 IGHV3-49A0A0A0MS15 119 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 ANGP03950 147 aaKnown RBP0.69□□□□□ -2.3
LINC00643-201ENST00000334389 MT1GP13640 62 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 ETDBQ3ZM63 59 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 C9orf153Q5TBE3 101 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 RBM12B-AS1Q9P1G2 102 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 KLK12Q9UKR0 248 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.69□□□□□ -2.3
LINC00643-201ENST00000334389 JMJD7-PLA2G4BH0Y9G9 81 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 TRIAP1O43715 76 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 ZC2HC1BQ5TFG8 222 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 Q6ZQT0 140 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 RPL39LQ96EH5 51 aaKnown RBP0.69□□□□□ -2.3
LINC00643-201ENST00000334389 CAMK2N2Q96S95 79 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 SMIM3Q9BZL3 60 aa0.69□□□□□ -2.3
LINC00643-201ENST00000334389 FXYD7P58549 80 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 TSPEAR-AS2P59090 65 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 FAM74A4Q5TZK3 123 aa0.68□□□□□ -2.3
LINC00643-201ENST00000334389 CLEC2BQ92478 149 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms