RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 ANK2Q01484 3957 aa12.31□□□□□ -0.44
CMTM4-201ENST00000330687 FLG2Q5D862 2391 aaPredicted RBP12.31□□□□□ -0.44
CMTM4-201ENST00000330687 CIRBP-AS1Q8TBR5 109 aa12.3□□□□□ -0.44
CMTM4-201ENST00000330687 SPINK1P00995 79 aa12.29□□□□□ -0.44
CMTM4-201ENST00000330687 PLA2G1BP04054 148 aaKnown RBP12.24□□□□□ -0.45
CMTM4-201ENST00000330687 UQCR11O14957 56 aa12.23□□□□□ -0.45
CMTM4-201ENST00000330687 ASB16-AS1Q495Z4 193 aa12.22□□□□□ -0.45
CMTM4-201ENST00000330687 LYSTQ99698 3801 aa12.21□□□□□ -0.45
CMTM4-201ENST00000330687 RTL8CO15255 209 aa12.21□□□□□ -0.46
CMTM4-201ENST00000330687 IGKV2D-30A0A075B6S6 120 aa12.2□□□□□ -0.46
CMTM4-201ENST00000330687 IGKV2-30P06310 120 aa12.2□□□□□ -0.46
CMTM4-201ENST00000330687 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.19□□□□□ -0.46
CMTM4-201ENST00000330687 C14orf177Q52M58 125 aa12.18□□□□□ -0.46
CMTM4-201ENST00000330687 WWC2-AS2Q96NR7 200 aa12.12□□□□□ -0.47
CMTM4-201ENST00000330687 TGP01266 2768 aa12.12□□□□□ -0.47
CMTM4-201ENST00000330687 SPATA8Q6RVD6 105 aa12.11□□□□□ -0.47
CMTM4-201ENST00000330687 PSORS1C2Q9UIG4 136 aa12.09□□□□□ -0.47
CMTM4-201ENST00000330687 DMAC1Q96GE9 116 aa12.08□□□□□ -0.48
CMTM4-201ENST00000330687 KRTAP13-1Q8IUC0 172 aa12.07□□□□□ -0.48
CMTM4-201ENST00000330687 ZNF706Q9Y5V0 76 aaPredicted RBP12.06□□□□□ -0.48
CMTM4-201ENST00000330687 KRTAP24-1Q3LI83 254 aa12.01□□□□□ -0.49
CMTM4-201ENST00000330687 C1orf134Q5TEV5 83 aa12.01□□□□□ -0.49
CMTM4-201ENST00000330687 CRIPTQ9P021 101 aa12□□□□□ -0.49
CMTM4-201ENST00000330687 DMBT1Q9UGM3 2413 aaPredicted RBP11.98□□□□□ -0.49
CMTM4-201ENST00000330687 FAM229AH3BQW9 127 aa11.96□□□□□ -0.49
CMTM4-201ENST00000330687 Q8N1X5 172 aa11.95□□□□□ -0.5
CMTM4-201ENST00000330687 KRTAP13-3Q3SY46 172 aa11.95□□□□□ -0.5
CMTM4-201ENST00000330687 ZNF861PO60384 105 aa11.93□□□□□ -0.5
CMTM4-201ENST00000330687 LINC00483Q53H64 154 aa11.92□□□□□ -0.5
CMTM4-201ENST00000330687 SPACA4Q8TDM5 124 aa11.91□□□□□ -0.5
CMTM4-201ENST00000330687 FBN3Q75N90 2809 aa11.91□□□□□ -0.5
CMTM4-201ENST00000330687 DNAH9Q9NYC9 4486 aa11.9□□□□□ -0.51
CMTM4-201ENST00000330687 NBDYA0A0U1RRE5 68 aa11.89□□□□□ -0.51
CMTM4-201ENST00000330687 IGLV5-52A0A0A0MRZ9 124 aa11.89□□□□□ -0.51
CMTM4-201ENST00000330687 MEGF8Q7Z7M0 2845 aa11.84□□□□□ -0.51
CMTM4-201ENST00000330687 APLNQ9ULZ1 77 aa11.84□□□□□ -0.51
CMTM4-201ENST00000330687 DNAH1Q9P2D7 4330 aa11.83□□□□□ -0.52
CMTM4-201ENST00000330687 FRAS1Q86XX4 4008 aa11.81□□□□□ -0.52
CMTM4-201ENST00000330687 IGLV7-43P04211 117 aa11.77□□□□□ -0.53
CMTM4-201ENST00000330687 A0A087WTM6 91 aa11.74□□□□□ -0.53
CMTM4-201ENST00000330687 HUWE1Q7Z6Z7 4374 aaKnown RBP11.72□□□□□ -0.53
CMTM4-201ENST00000330687 SSBP3-AS1Q7Z2R9 100 aa11.68□□□□□ -0.54
CMTM4-201ENST00000330687 Q6ZRN7 208 aaPredicted RBP11.67□□□□□ -0.54
CMTM4-201ENST00000330687 DNAH7Q8WXX0 4024 aa11.66□□□□□ -0.54
CMTM4-201ENST00000330687 ALMS1Q8TCU4 4167 aa11.66□□□□□ -0.54
CMTM4-201ENST00000330687 KRTAP25-1Q3LHN0 102 aa11.65□□□□□ -0.54
CMTM4-201ENST00000330687 ROMO1P60602 79 aa11.64□□□□□ -0.55
CMTM4-201ENST00000330687 LINC00304Q8N9R0 145 aa11.62□□□□□ -0.55
CMTM4-201ENST00000330687 H0YAA0 97 aa11.61□□□□□ -0.55
CMTM4-201ENST00000330687 TYMSOSQ8TAI1 123 aa11.61□□□□□ -0.55
CMTM4-201ENST00000330687 CMYA5Q8N3K9 4069 aa11.61□□□□□ -0.55
CMTM4-201ENST00000330687 Q6ZSA8 131 aa11.61□□□□□ -0.55
CMTM4-201ENST00000330687 DNAH8Q96JB1 4490 aa11.59□□□□□ -0.55
CMTM4-201ENST00000330687 A0A1B0GU33 70 aa11.55□□□□□ -0.56
CMTM4-201ENST00000330687 LY6G6CO95867 125 aa11.54□□□□□ -0.56
CMTM4-201ENST00000330687 A8MUU9 505 aa11.54□□□□□ -0.56
CMTM4-201ENST00000330687 KRTAP13-2Q52LG2 175 aa11.49□□□□□ -0.57
CMTM4-201ENST00000330687 KRTAP16-1A8MUX0 517 aa11.48□□□□□ -0.57
CMTM4-201ENST00000330687 K7ERS5 55 aa11.47□□□□□ -0.57
CMTM4-201ENST00000330687 PLECQ15149 4684 aaKnown RBP11.47□□□□□ -0.57
CMTM4-201ENST00000330687 SPINT4Q6UDR6 99 aa11.45□□□□□ -0.58
CMTM4-201ENST00000330687 NUPR2A6NF83 97 aa11.44□□□□□ -0.58
CMTM4-201ENST00000330687 DNAH17Q9UFH2 4485 aa11.43□□□□□ -0.58
CMTM4-201ENST00000330687 C9orf92A6NGG3 77 aa11.41□□□□□ -0.58
CMTM4-201ENST00000330687 A0A0D9SG42 100 aa11.37□□□□□ -0.59
CMTM4-201ENST00000330687 H1FX-AS1Q4G0G2 97 aa11.35□□□□□ -0.59
CMTM4-201ENST00000330687 P0C880 135 aa11.34□□□□□ -0.59
CMTM4-201ENST00000330687 KRTAP10-2P60368 255 aa11.28□□□□□ -0.6
CMTM4-201ENST00000330687 DNAH3Q8TD57 4116 aa11.25□□□□□ -0.61
CMTM4-201ENST00000330687 KMT2AQ03164 3969 aa11.23□□□□□ -0.61
CMTM4-201ENST00000330687 HECTD4Q9Y4D8 3996 aa11.21□□□□□ -0.62
CMTM4-201ENST00000330687 C10orf95Q9H7T3 257 aa11.19□□□□□ -0.62
CMTM4-201ENST00000330687 COX6B2Q6YFQ2 88 aa11.18□□□□□ -0.62
CMTM4-201ENST00000330687 NDUFAF8A1L188 74 aa11.17□□□□□ -0.62
CMTM4-201ENST00000330687 STARD9Q9P2P6 4700 aa11.15□□□□□ -0.62
CMTM4-201ENST00000330687 KRTAP3-1Q9BYR8 98 aa11.11□□□□□ -0.63
CMTM4-201ENST00000330687 DNAH11Q96DT5 4516 aa11.1□□□□□ -0.63
CMTM4-201ENST00000330687 DNAH6Q9C0G6 4158 aa11.1□□□□□ -0.63
CMTM4-201ENST00000330687 KRTAP1-4P0C5Y4 121 aa11.09□□□□□ -0.63
CMTM4-201ENST00000330687 KRTAP10-1P60331 282 aa11.08□□□□□ -0.64
CMTM4-201ENST00000330687 DNAH2Q9P225 4427 aa11.06□□□□□ -0.64
CMTM4-201ENST00000330687 DNHD1Q96M86 4753 aa11.04□□□□□ -0.64
CMTM4-201ENST00000330687 RPL37P61927 97 aaKnown RBP11.01□□□□□ -0.65
CMTM4-201ENST00000330687 LRP1BQ9NZR2 4599 aa11.01□□□□□ -0.65
CMTM4-201ENST00000330687 TPRXLQ17RH7 258 aa11□□□□□ -0.65
CMTM4-201ENST00000330687 VPS13DQ5THJ4 4388 aa11□□□□□ -0.65
CMTM4-201ENST00000330687 PRKDCP78527 4128 aaKnown RBP10.97□□□□□ -0.65
CMTM4-201ENST00000330687 SMR3BP02814 79 aaPredicted RBP10.96□□□□□ -0.65
CMTM4-201ENST00000330687 C20orf166-AS1Q96NR2 134 aa10.88□□□□□ -0.67
CMTM4-201ENST00000330687 KRTAP13-4Q3LI77 160 aa10.87□□□□□ -0.67
CMTM4-201ENST00000330687 VPS13BQ7Z7G8 4022 aa10.78□□□□□ -0.68
CMTM4-201ENST00000330687 DYNC2H1Q8NCM8 4307 aaKnown RBP10.74□□□□□ -0.69
CMTM4-201ENST00000330687 DNAH5Q8TE73 4624 aa10.74□□□□□ -0.69
CMTM4-201ENST00000330687 KRTAP10-6P60371 365 aaPredicted RBP10.69□□□□□ -0.7
CMTM4-201ENST00000330687 S4R3F8 94 aa10.65□□□□□ -0.7
CMTM4-201ENST00000330687 KRTAP15-1Q3LI76 137 aa10.64□□□□□ -0.71
CMTM4-201ENST00000330687 KRTAP12-2P59991 146 aa10.61□□□□□ -0.71
CMTM4-201ENST00000330687 FAT2Q9NYQ8 4349 aa10.58□□□□□ -0.72
CMTM4-201ENST00000330687 KRTAP3-3Q9BYR6 98 aa10.51□□□□□ -0.73
CMTM4-201ENST00000330687 KRTAP3-2Q9BYR7 98 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms