RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 TENM3Q9P273 2699 aa8.93□□□□□ -0.98
PTPRA-201ENST00000216877 SPINK1P00995 79 aa8.92□□□□□ -0.98
PTPRA-201ENST00000216877 A0A087X002 238 aa8.91□□□□□ -0.98
PTPRA-201ENST00000216877 NOTCH2NLQ7Z3S9 236 aa8.91□□□□□ -0.98
PTPRA-201ENST00000216877 COL7A1Q02388 2944 aa8.9□□□□□ -0.98
PTPRA-201ENST00000216877 A0A1B0GVX0 72 aa8.89□□□□□ -0.99
PTPRA-201ENST00000216877 RTL8CO15255 209 aa8.89□□□□□ -0.99
PTPRA-201ENST00000216877 LY6G6CO95867 125 aa8.88□□□□□ -0.99
PTPRA-201ENST00000216877 ANAPC11Q9NYG5 84 aa8.86□□□□□ -0.99
PTPRA-201ENST00000216877 KRTAP11-1Q8IUC1 163 aa8.86□□□□□ -0.99
PTPRA-201ENST00000216877 Q5W150 140 aa8.85□□□□□ -0.99
PTPRA-201ENST00000216877 SPATA8Q6RVD6 105 aa8.84□□□□□ -0.99
PTPRA-201ENST00000216877 CRIPTQ9P021 101 aa8.84□□□□□ -0.99
PTPRA-201ENST00000216877 DNAH10OSP0CZ25 163 aa8.83□□□□□ -1
PTPRA-201ENST00000216877 H3BNG1 76 aa8.82□□□□□ -1
PTPRA-201ENST00000216877 DMBT1Q9UGM3 2413 aaPredicted RBP8.78□□□□□ -1
PTPRA-201ENST00000216877 IGKV2D-30A0A075B6S6 120 aa8.77□□□□□ -1.01
PTPRA-201ENST00000216877 IGKV2-30P06310 120 aa8.77□□□□□ -1.01
PTPRA-201ENST00000216877 FRAS1Q86XX4 4008 aa8.77□□□□□ -1.01
PTPRA-201ENST00000216877 DNAH10Q8IVF4 4471 aa8.76□□□□□ -1.01
PTPRA-201ENST00000216877 Q96NJ1 140 aa8.75□□□□□ -1.01
PTPRA-201ENST00000216877 DNHD1Q96M86 4753 aa8.74□□□□□ -1.01
PTPRA-201ENST00000216877 TENM2Q9NT68 2774 aa8.74□□□□□ -1.01
PTPRA-201ENST00000216877 CIRBP-AS1Q8TBR5 109 aa8.73□□□□□ -1.01
PTPRA-201ENST00000216877 ASB16-AS1Q495Z4 193 aa8.73□□□□□ -1.01
PTPRA-201ENST00000216877 SPRR1BP22528 89 aa8.71□□□□□ -1.02
PTPRA-201ENST00000216877 ZNF861PO60384 105 aa8.69□□□□□ -1.02
PTPRA-201ENST00000216877 ROMO1P60602 79 aa8.68□□□□□ -1.02
PTPRA-201ENST00000216877 DMAC1Q96GE9 116 aa8.68□□□□□ -1.02
PTPRA-201ENST00000216877 DNAH2Q9P225 4427 aa8.66□□□□□ -1.02
PTPRA-201ENST00000216877 STARD9Q9P2P6 4700 aa8.66□□□□□ -1.02
PTPRA-201ENST00000216877 SSBP3-AS1Q7Z2R9 100 aa8.66□□□□□ -1.02
PTPRA-201ENST00000216877 HECTD4Q9Y4D8 3996 aa8.65□□□□□ -1.02
PTPRA-201ENST00000216877 NUPR2A6NF83 97 aa8.65□□□□□ -1.02
PTPRA-201ENST00000216877 PLECQ15149 4684 aaKnown RBP8.65□□□□□ -1.03
PTPRA-201ENST00000216877 TGP01266 2768 aa8.64□□□□□ -1.03
PTPRA-201ENST00000216877 DNAH6Q9C0G6 4158 aa8.62□□□□□ -1.03
PTPRA-201ENST00000216877 C14orf177Q52M58 125 aa8.62□□□□□ -1.03
PTPRA-201ENST00000216877 A0A0A0MQY5 61 aa8.62□□□□□ -1.03
PTPRA-201ENST00000216877 KRTAP25-1Q3LHN0 102 aa8.6□□□□□ -1.03
PTPRA-201ENST00000216877 PANO1I0J062 215 aa8.59□□□□□ -1.03
PTPRA-201ENST00000216877 Q8N1X5 172 aa8.58□□□□□ -1.04
PTPRA-201ENST00000216877 KRTAP1-5Q9BYS1 174 aa8.58□□□□□ -1.04
PTPRA-201ENST00000216877 FAM229AH3BQW9 127 aa8.57□□□□□ -1.04
PTPRA-201ENST00000216877 VPS13DQ5THJ4 4388 aa8.57□□□□□ -1.04
PTPRA-201ENST00000216877 SPINT4Q6UDR6 99 aa8.57□□□□□ -1.04
PTPRA-201ENST00000216877 IGLV7-43P04211 117 aa8.55□□□□□ -1.04
PTPRA-201ENST00000216877 KMT2AQ03164 3969 aa8.55□□□□□ -1.04
PTPRA-201ENST00000216877 NBDYA0A0U1RRE5 68 aa8.54□□□□□ -1.04
PTPRA-201ENST00000216877 FBN3Q75N90 2809 aa8.54□□□□□ -1.04
PTPRA-201ENST00000216877 IGLV5-52A0A0A0MRZ9 124 aa8.54□□□□□ -1.04
PTPRA-201ENST00000216877 A8MUU9 505 aa8.51□□□□□ -1.05
PTPRA-201ENST00000216877 WWC2-AS2Q96NR7 200 aa8.51□□□□□ -1.05
PTPRA-201ENST00000216877 PKD1P98161 4303 aa8.5□□□□□ -1.05
PTPRA-201ENST00000216877 K7ERS5 55 aa8.48□□□□□ -1.05
PTPRA-201ENST00000216877 LINC00304Q8N9R0 145 aa8.48□□□□□ -1.05
PTPRA-201ENST00000216877 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.48□□□□□ -1.05
PTPRA-201ENST00000216877 PSORS1C2Q9UIG4 136 aa8.45□□□□□ -1.06
PTPRA-201ENST00000216877 KRTAP13-3Q3SY46 172 aa8.45□□□□□ -1.06
PTPRA-201ENST00000216877 APLNQ9ULZ1 77 aa8.45□□□□□ -1.06
PTPRA-201ENST00000216877 FAT2Q9NYQ8 4349 aa8.44□□□□□ -1.06
PTPRA-201ENST00000216877 DNAH11Q96DT5 4516 aa8.41□□□□□ -1.06
PTPRA-201ENST00000216877 P0C880 135 aa8.41□□□□□ -1.06
PTPRA-201ENST00000216877 KRTAP13-1Q8IUC0 172 aa8.41□□□□□ -1.06
PTPRA-201ENST00000216877 DNAH8Q96JB1 4490 aa8.4□□□□□ -1.07
PTPRA-201ENST00000216877 A0A1B0GU33 70 aa8.4□□□□□ -1.07
PTPRA-201ENST00000216877 HYDINQ4G0P3 5121 aa8.4□□□□□ -1.07
PTPRA-201ENST00000216877 SPACA4Q8TDM5 124 aa8.39□□□□□ -1.07
PTPRA-201ENST00000216877 NDUFAF8A1L188 74 aa8.38□□□□□ -1.07
PTPRA-201ENST00000216877 H0YAA0 97 aa8.38□□□□□ -1.07
PTPRA-201ENST00000216877 Q6ZSA8 131 aa8.38□□□□□ -1.07
PTPRA-201ENST00000216877 ALMS1Q8TCU4 4167 aa8.38□□□□□ -1.07
PTPRA-201ENST00000216877 MEGF8Q7Z7M0 2845 aa8.35□□□□□ -1.07
PTPRA-201ENST00000216877 LINC00483Q53H64 154 aa8.34□□□□□ -1.07
PTPRA-201ENST00000216877 TYMSOSQ8TAI1 123 aa8.33□□□□□ -1.08
PTPRA-201ENST00000216877 A0A087WTM6 91 aa8.33□□□□□ -1.08
PTPRA-201ENST00000216877 DNAH17Q9UFH2 4485 aa8.32□□□□□ -1.08
PTPRA-201ENST00000216877 DNAH5Q8TE73 4624 aa8.3□□□□□ -1.08
PTPRA-201ENST00000216877 SMR3BP02814 79 aaPredicted RBP8.3□□□□□ -1.08
PTPRA-201ENST00000216877 A0A0D9SG42 100 aa8.26□□□□□ -1.09
PTPRA-201ENST00000216877 H1FX-AS1Q4G0G2 97 aa8.21□□□□□ -1.09
PTPRA-201ENST00000216877 KRTAP16-1A8MUX0 517 aa8.21□□□□□ -1.09
PTPRA-201ENST00000216877 C10orf95Q9H7T3 257 aa8.18□□□□□ -1.1
PTPRA-201ENST00000216877 C20orf166-AS1Q96NR2 134 aa8.16□□□□□ -1.1
PTPRA-201ENST00000216877 SACSQ9NZJ4 4579 aa8.14□□□□□ -1.11
PTPRA-201ENST00000216877 KRTAP10-2P60368 255 aa8.1□□□□□ -1.11
PTPRA-201ENST00000216877 VPS13BQ7Z7G8 4022 aa8.08□□□□□ -1.12
PTPRA-201ENST00000216877 PKHD1P08F94 4074 aa8.08□□□□□ -1.12
PTPRA-201ENST00000216877 C9orf92A6NGG3 77 aa8.06□□□□□ -1.12
PTPRA-201ENST00000216877 COX6B2Q6YFQ2 88 aa8.05□□□□□ -1.12
PTPRA-201ENST00000216877 TPRXLQ17RH7 258 aa8.03□□□□□ -1.12
PTPRA-201ENST00000216877 PKHD1L1Q86WI1 4243 aa8.02□□□□□ -1.13
PTPRA-201ENST00000216877 RPL37P61927 97 aaKnown RBP8.01□□□□□ -1.13
PTPRA-201ENST00000216877 KRTAP13-2Q52LG2 175 aa8□□□□□ -1.13
PTPRA-201ENST00000216877 Q6ZRN7 208 aaPredicted RBP8□□□□□ -1.13
PTPRA-201ENST00000216877 KRTAP10-1P60331 282 aa7.97□□□□□ -1.13
PTPRA-201ENST00000216877 KMT2CQ8NEZ4 4911 aaKnown RBP7.91□□□□□ -1.14
PTPRA-201ENST00000216877 RYR2Q92736 4967 aa7.9□□□□□ -1.14
PTPRA-201ENST00000216877 LUZP6Q538Z0 58 aa7.88□□□□□ -1.15
PTPRA-201ENST00000216877 LRP1BQ9NZR2 4599 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms