RNA–Protein interactions for RNA: ENST00000593946.5

PNKP-203, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 1 (best)

Gene PNKP, Length 1,723 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-203ENST00000593946 SMIM29Q86T20 159 aa12.61□□□□□ -0.39
PNKP-203ENST00000593946 VPS13BQ7Z7G8 4022 aa12.6□□□□□ -0.39
PNKP-203ENST00000593946 GAGE2AQ6NT46 116 aa12.59□□□□□ -0.39
PNKP-203ENST00000593946 SPRR4Q96PI1 79 aa12.59□□□□□ -0.39
PNKP-203ENST00000593946 CDIP1Q9H305 208 aa12.58□□□□□ -0.4
PNKP-203ENST00000593946 ZNF706Q9Y5V0 76 aaPredicted RBP12.57□□□□□ -0.4
PNKP-203ENST00000593946 LOC110117498A0A087WWA1 95 aa12.55□□□□□ -0.4
PNKP-203ENST00000593946 TRBV7-4A0A0J9YYF1 115 aa12.55□□□□□ -0.4
PNKP-203ENST00000593946 SMR3BP02814 79 aaPredicted RBP12.55□□□□□ -0.4
PNKP-203ENST00000593946 LINC00483Q53H64 154 aa12.55□□□□□ -0.4
PNKP-203ENST00000593946 DSCR8Q96T75 97 aa12.55□□□□□ -0.4
PNKP-203ENST00000593946 RPL37AP61513 92 aaKnown RBP12.54□□□□□ -0.4
PNKP-203ENST00000593946 Q6ZQT0 140 aa12.53□□□□□ -0.4
PNKP-203ENST00000593946 F8WEM9 126 aa12.51□□□□□ -0.41
PNKP-203ENST00000593946 CCKP06307 115 aa12.51□□□□□ -0.41
PNKP-203ENST00000593946 PDE6GP18545 87 aa12.51□□□□□ -0.41
PNKP-203ENST00000593946 FAM240AA0A1B0GVK7 77 aa12.5□□□□□ -0.41
PNKP-203ENST00000593946 IGLV8-61A0A075B6I0 122 aa12.49□□□□□ -0.41
PNKP-203ENST00000593946 CDK2AP2O75956 126 aa12.49□□□□□ -0.41
PNKP-203ENST00000593946 MT-ATP8P03928 68 aa12.46□□□□□ -0.41
PNKP-203ENST00000593946 KRTAP10-4P60372 401 aaPredicted RBP12.46□□□□□ -0.41
PNKP-203ENST00000593946 ANAPC11Q9NYG5 84 aa12.45□□□□□ -0.42
PNKP-203ENST00000593946 ACYP1P07311 99 aa12.44□□□□□ -0.42
PNKP-203ENST00000593946 Q6Q795 121 aa12.42□□□□□ -0.42
PNKP-203ENST00000593946 IGFL1Q6UW32 110 aa12.42□□□□□ -0.42
PNKP-203ENST00000593946 FAT1Q14517 4588 aa12.42□□□□□ -0.42
PNKP-203ENST00000593946 SPINK6Q6UWN8 80 aa12.41□□□□□ -0.42
PNKP-203ENST00000593946 IGLV9-49A0A0B4J1Y8 123 aa12.4□□□□□ -0.43
PNKP-203ENST00000593946 Q6JHZ5 121 aa12.4□□□□□ -0.43
PNKP-203ENST00000593946 A0A1W2PNM2 257 aa12.38□□□□□ -0.43
PNKP-203ENST00000593946 HSPG2P98160 4391 aa12.37□□□□□ -0.43
PNKP-203ENST00000593946 KRTAP1-4P0C5Y4 121 aa12.37□□□□□ -0.43
PNKP-203ENST00000593946 EPPK1P58107 5090 aaKnown RBP12.37□□□□□ -0.43
PNKP-203ENST00000593946 A0A0G2JQZ4 141 aa12.37□□□□□ -0.43
PNKP-203ENST00000593946 C9orf153Q5TBE3 101 aa12.37□□□□□ -0.43
PNKP-203ENST00000593946 Q8NBF4 154 aa12.37□□□□□ -0.43
PNKP-203ENST00000593946 ANAPC13Q9BS18 74 aa12.36□□□□□ -0.43
PNKP-203ENST00000593946 LINC00846Q9NV44 126 aa12.36□□□□□ -0.43
PNKP-203ENST00000593946 FAM229BQ4G0N7 80 aa12.35□□□□□ -0.43
PNKP-203ENST00000593946 FAM229AH3BQW9 127 aa12.34□□□□□ -0.43
PNKP-203ENST00000593946 MOBPQ13875 183 aa12.34□□□□□ -0.43
PNKP-203ENST00000593946 PLA2G1BP04054 148 aaKnown RBP12.34□□□□□ -0.43
PNKP-203ENST00000593946 RYR1P21817 5038 aa12.32□□□□□ -0.44
PNKP-203ENST00000593946 A0A087X002 238 aa12.31□□□□□ -0.44
PNKP-203ENST00000593946 A0A1B0GW54 56 aa12.31□□□□□ -0.44
PNKP-203ENST00000593946 CRYGAP11844 174 aa12.31□□□□□ -0.44
PNKP-203ENST00000593946 Q5VSD8 79 aa12.29□□□□□ -0.44
PNKP-203ENST00000593946 KRTAP13-2Q52LG2 175 aa12.28□□□□□ -0.44
PNKP-203ENST00000593946 KIAA1109Q2LD37 5005 aa12.26□□□□□ -0.45
PNKP-203ENST00000593946 SSBP3-AS1Q7Z2R9 100 aa12.25□□□□□ -0.45
PNKP-203ENST00000593946 UBL5Q9BZL1 73 aa12.25□□□□□ -0.45
PNKP-203ENST00000593946 KRTAP17-1Q9BYP8 105 aa12.24□□□□□ -0.45
PNKP-203ENST00000593946 LINC00643Q86TS7 51 aa12.23□□□□□ -0.45
PNKP-203ENST00000593946 IMUPQ9GZP8 106 aa12.23□□□□□ -0.45
PNKP-203ENST00000593946 Q6ZVQ6 151 aa12.22□□□□□ -0.45
PNKP-203ENST00000593946 TRBV7-7A0A0K0K1E9 115 aa12.2□□□□□ -0.46
PNKP-203ENST00000593946 PKHD1L1Q86WI1 4243 aa12.2□□□□□ -0.46
PNKP-203ENST00000593946 A0A087WSZ3 146 aa12.2□□□□□ -0.46
PNKP-203ENST00000593946 Q8N1X5 172 aa12.2□□□□□ -0.46
PNKP-203ENST00000593946 NREPQ16612 68 aa12.17□□□□□ -0.46
PNKP-203ENST00000593946 HRCT1Q6UXD1 115 aa12.16□□□□□ -0.46
PNKP-203ENST00000593946 CD164Q04900 197 aa12.15□□□□□ -0.46
PNKP-203ENST00000593946 PRR26Q8N8Z3 221 aa12.15□□□□□ -0.46
PNKP-203ENST00000593946 TYMSOSQ8TAI1 123 aa12.14□□□□□ -0.47
PNKP-203ENST00000593946 ATP5EP2Q5VTU8 51 aa12.11□□□□□ -0.47
PNKP-203ENST00000593946 IGKV3D-7A0A0C4DH55 119 aa12.09□□□□□ -0.47
PNKP-203ENST00000593946 CXCL6P80162 114 aa12.07□□□□□ -0.48
PNKP-203ENST00000593946 SS18L2Q9UHA2 77 aa12.07□□□□□ -0.48
PNKP-203ENST00000593946 BPY2O14599 106 aa12.03□□□□□ -0.48
PNKP-203ENST00000593946 SVIPQ8NHG7 77 aa12.03□□□□□ -0.48
PNKP-203ENST00000593946 LINC00472Q9H8W2 130 aa12.03□□□□□ -0.48
PNKP-203ENST00000593946 CCDC179H3BU77 68 aa12.02□□□□□ -0.49
PNKP-203ENST00000593946 FLG2Q5D862 2391 aaPredicted RBP12.01□□□□□ -0.49
PNKP-203ENST00000593946 LINC00304Q8N9R0 145 aa12□□□□□ -0.49
PNKP-203ENST00000593946 Q96NJ1 140 aa12□□□□□ -0.49
PNKP-203ENST00000593946 C4orf48Q5BLP8 95 aa12□□□□□ -0.49
PNKP-203ENST00000593946 Q5XG85 94 aa12□□□□□ -0.49
PNKP-203ENST00000593946 DEFB116Q30KQ4 102 aa11.99□□□□□ -0.49
PNKP-203ENST00000593946 SPINK1P00995 79 aa11.98□□□□□ -0.49
PNKP-203ENST00000593946 FAM236AA0A1B0GUQ0 79 aa11.97□□□□□ -0.49
PNKP-203ENST00000593946 FAM236BA0A1B0GV22 79 aa11.97□□□□□ -0.49
PNKP-203ENST00000593946 ASB16-AS1Q495Z4 193 aa11.97□□□□□ -0.49
PNKP-203ENST00000593946 LRP1Q07954 4544 aaKnown RBP11.97□□□□□ -0.49
PNKP-203ENST00000593946 SPAG11AQ6PDA7 123 aa11.97□□□□□ -0.49
PNKP-203ENST00000593946 DSCR10P59022 87 aa11.96□□□□□ -0.49
PNKP-203ENST00000593946 BIRC6Q9NR09 4857 aa11.96□□□□□ -0.5
PNKP-203ENST00000593946 LIMD2Q9BT23 127 aa11.94□□□□□ -0.5
PNKP-203ENST00000593946 KRTAP10-8P60410 259 aa11.94□□□□□ -0.5
PNKP-203ENST00000593946 RPS29P62273 56 aaKnown RBP11.94□□□□□ -0.5
PNKP-203ENST00000593946 HIST1H4AP62805 103 aaKnown RBP11.94□□□□□ -0.5
PNKP-203ENST00000593946 KRTAP4-5Q9BYR2 181 aa11.94□□□□□ -0.5
PNKP-203ENST00000593946 UQCRQO14949 82 aa11.93□□□□□ -0.5
PNKP-203ENST00000593946 Q8N9L7 120 aa11.93□□□□□ -0.5
PNKP-203ENST00000593946 J3KT08 172 aa11.92□□□□□ -0.5
PNKP-203ENST00000593946 ATOX1O00244 68 aa11.91□□□□□ -0.5
PNKP-203ENST00000593946 IGKV4-1P06312 121 aa11.91□□□□□ -0.5
PNKP-203ENST00000593946 A0A087WVE0 104 aa11.9□□□□□ -0.5
PNKP-203ENST00000593946 FAT3Q8TDW7 4589 aa11.89□□□□□ -0.51
PNKP-203ENST00000593946 K7EQZ3 153 aa11.89□□□□□ -0.51
PNKP-203ENST00000593946 MYCBP2O75592 4640 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms