RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CSMD3Q7Z407 3707 aa14.24□□□□□ -0.13
VPS53-211ENST00000571805 PHF5AQ7RTV0 110 aaKnown RBP14.24□□□□□ -0.13
VPS53-211ENST00000571805 TENM2Q9NT68 2774 aa14.22□□□□□ -0.13
VPS53-211ENST00000571805 FAM30AQ9NZY2 134 aa14.22□□□□□ -0.13
VPS53-211ENST00000571805 LRCOL1A6NCL2 159 aa14.19□□□□□ -0.14
VPS53-211ENST00000571805 C4orf26Q17RF5 130 aa14.19□□□□□ -0.14
VPS53-211ENST00000571805 PLECQ15149 4684 aaKnown RBP14.19□□□□□ -0.14
VPS53-211ENST00000571805 LCE6AA0A183 80 aa14.19□□□□□ -0.14
VPS53-211ENST00000571805 C9orf163Q8N9P6 203 aa14.19□□□□□ -0.14
VPS53-211ENST00000571805 ATP5EP56381 51 aaPredicted RBP14.18□□□□□ -0.14
VPS53-211ENST00000571805 H0Y9J4 135 aa14.18□□□□□ -0.14
VPS53-211ENST00000571805 SRRM2Q9UQ35 2752 aaKnown RBP14.17□□□□□ -0.14
VPS53-211ENST00000571805 UBE2AP49459 152 aa14.16□□□□□ -0.14
VPS53-211ENST00000571805 B9D2Q9BPU9 175 aa14.16□□□□□ -0.14
VPS53-211ENST00000571805 SPRR1BP22528 89 aa14.15□□□□□ -0.14
VPS53-211ENST00000571805 A0A087WSZ3 146 aa14.15□□□□□ -0.14
VPS53-211ENST00000571805 NBDYA0A0U1RRE5 68 aa14.13□□□□□ -0.15
VPS53-211ENST00000571805 DEFB116Q30KQ4 102 aa14.13□□□□□ -0.15
VPS53-211ENST00000571805 C5orf47Q569G3 176 aa14.12□□□□□ -0.15
VPS53-211ENST00000571805 HCG22E2RYF7 251 aa14.11□□□□□ -0.15
VPS53-211ENST00000571805 Q6ZRN7 208 aaPredicted RBP14.11□□□□□ -0.15
VPS53-211ENST00000571805 MDFIQ99750 246 aa14.1□□□□□ -0.15
VPS53-211ENST00000571805 PANO1I0J062 215 aa14.09□□□□□ -0.15
VPS53-211ENST00000571805 HRCT1Q6UXD1 115 aa14.08□□□□□ -0.16
VPS53-211ENST00000571805 SMIM26A0A096LP01 95 aa14.07□□□□□ -0.16
VPS53-211ENST00000571805 LINC00474Q9P2X8 69 aa14.06□□□□□ -0.16
VPS53-211ENST00000571805 PKIGQ9Y2B9 76 aa14.06□□□□□ -0.16
VPS53-211ENST00000571805 FP248Q71RG6 208 aaPredicted RBP14.05□□□□□ -0.16
VPS53-211ENST00000571805 ZCCHC13Q8WW36 166 aaKnown RBP14.05□□□□□ -0.16
VPS53-211ENST00000571805 KRTAP13-1Q8IUC0 172 aa14.03□□□□□ -0.16
VPS53-211ENST00000571805 NUPR2A6NF83 97 aa14.03□□□□□ -0.16
VPS53-211ENST00000571805 RPL37AP61513 92 aaKnown RBP14.02□□□□□ -0.16
VPS53-211ENST00000571805 WFDC13Q8IUB5 93 aa13.99□□□□□ -0.17
VPS53-211ENST00000571805 VPS13DQ5THJ4 4388 aa13.98□□□□□ -0.17
VPS53-211ENST00000571805 LINC00472Q9H8W2 130 aa13.97□□□□□ -0.17
VPS53-211ENST00000571805 KRTAP29-1A8MX34 341 aaPredicted RBP13.97□□□□□ -0.17
VPS53-211ENST00000571805 STARD9Q9P2P6 4700 aa13.96□□□□□ -0.17
VPS53-211ENST00000571805 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.96□□□□□ -0.18
VPS53-211ENST00000571805 SPACA4Q8TDM5 124 aa13.95□□□□□ -0.18
VPS53-211ENST00000571805 FAM229BQ4G0N7 80 aa13.95□□□□□ -0.18
VPS53-211ENST00000571805 PRR15Q8IV56 129 aa13.93□□□□□ -0.18
VPS53-211ENST00000571805 A8MWP4 228 aa13.9□□□□□ -0.18
VPS53-211ENST00000571805 A0A087WTM6 91 aa13.87□□□□□ -0.19
VPS53-211ENST00000571805 HECTD4Q9Y4D8 3996 aa13.87□□□□□ -0.19
VPS53-211ENST00000571805 CASC2Q6XLA1 102 aa13.87□□□□□ -0.19
VPS53-211ENST00000571805 PRKDCP78527 4128 aaKnown RBP13.84□□□□□ -0.19
VPS53-211ENST00000571805 hDV103S1A0JD37 113 aa13.83□□□□□ -0.2
VPS53-211ENST00000571805 MP68P56378 58 aa13.82□□□□□ -0.2
VPS53-211ENST00000571805 LINC00483Q53H64 154 aa13.81□□□□□ -0.2
VPS53-211ENST00000571805 IGLV9-49A0A0B4J1Y8 123 aa13.8□□□□□ -0.2
VPS53-211ENST00000571805 C1orf64Q8NEQ6 169 aa13.79□□□□□ -0.2
VPS53-211ENST00000571805 DNAH2Q9P225 4427 aa13.78□□□□□ -0.2
VPS53-211ENST00000571805 TRAV22A0A0B4J277 110 aa13.78□□□□□ -0.2
VPS53-211ENST00000571805 NDUFB1O75438 58 aa13.78□□□□□ -0.2
VPS53-211ENST00000571805 LINC00336Q6ZUF6 198 aa13.78□□□□□ -0.2
VPS53-211ENST00000571805 LINC00208Q96KT6 92 aa13.78□□□□□ -0.2
VPS53-211ENST00000571805 RTL8CO15255 209 aa13.77□□□□□ -0.21
VPS53-211ENST00000571805 Q96NJ1 140 aa13.77□□□□□ -0.21
VPS53-211ENST00000571805 CYP4F30PQ9H0H9 118 aa13.77□□□□□ -0.21
VPS53-211ENST00000571805 DNAH17Q9UFH2 4485 aa13.77□□□□□ -0.21
VPS53-211ENST00000571805 MPLKIPQ8TAP9 179 aa13.76□□□□□ -0.21
VPS53-211ENST00000571805 MMP24-AS1A0A0U1RRL7 71 aa13.76□□□□□ -0.21
VPS53-211ENST00000571805 PSORS1C2Q9UIG4 136 aa13.75□□□□□ -0.21
VPS53-211ENST00000571805 Q6ZR54 194 aa13.75□□□□□ -0.21
VPS53-211ENST00000571805 KMT2AQ03164 3969 aa13.75□□□□□ -0.21
VPS53-211ENST00000571805 H0Y9P7 68 aa13.74□□□□□ -0.21
VPS53-211ENST00000571805 IGLV5-52A0A0A0MRZ9 124 aa13.74□□□□□ -0.21
VPS53-211ENST00000571805 DNAH8Q96JB1 4490 aa13.73□□□□□ -0.21
VPS53-211ENST00000571805 H3BPC8 53 aa13.72□□□□□ -0.21
VPS53-211ENST00000571805 PLAC8Q9NZF1 115 aa13.72□□□□□ -0.21
VPS53-211ENST00000571805 PRR4Q16378 134 aa13.72□□□□□ -0.21
VPS53-211ENST00000571805 WWC2-AS2Q96NR7 200 aa13.72□□□□□ -0.21
VPS53-211ENST00000571805 ZNF706Q9Y5V0 76 aaPredicted RBP13.71□□□□□ -0.22
VPS53-211ENST00000571805 MOBPQ13875 183 aa13.7□□□□□ -0.22
VPS53-211ENST00000571805 FBN3Q75N90 2809 aa13.68□□□□□ -0.22
VPS53-211ENST00000571805 ASB16-AS1Q495Z4 193 aa13.67□□□□□ -0.22
VPS53-211ENST00000571805 FRAS1Q86XX4 4008 aa13.66□□□□□ -0.22
VPS53-211ENST00000571805 ZNF861PO60384 105 aa13.66□□□□□ -0.22
VPS53-211ENST00000571805 MEGF8Q7Z7M0 2845 aa13.65□□□□□ -0.22
VPS53-211ENST00000571805 ANAPC11Q9NYG5 84 aa13.65□□□□□ -0.22
VPS53-211ENST00000571805 PRO0628Q9UI54 55 aa13.63□□□□□ -0.23
VPS53-211ENST00000571805 SPANXA2-OT1Q8N9U9 137 aa13.62□□□□□ -0.23
VPS53-211ENST00000571805 Q1T7F1 81 aa13.59□□□□□ -0.23
VPS53-211ENST00000571805 C8orf17Q9NRJ1 99 aa13.59□□□□□ -0.23
VPS53-211ENST00000571805 TGP01266 2768 aa13.57□□□□□ -0.24
VPS53-211ENST00000571805 C1orf134Q5TEV5 83 aa13.56□□□□□ -0.24
VPS53-211ENST00000571805 A0A1B0GVX0 72 aa13.56□□□□□ -0.24
VPS53-211ENST00000571805 TP53AIP1Q9HCN2 124 aa13.54□□□□□ -0.24
VPS53-211ENST00000571805 IGHV6-1A0A0B4J1U7 121 aa13.53□□□□□ -0.24
VPS53-211ENST00000571805 IGLV7-43P04211 117 aa13.5□□□□□ -0.25
VPS53-211ENST00000571805 BRK1Q8WUW1 75 aa13.5□□□□□ -0.25
VPS53-211ENST00000571805 A0A087X002 238 aa13.46□□□□□ -0.25
VPS53-211ENST00000571805 CDK2AP2O75956 126 aa13.46□□□□□ -0.25
VPS53-211ENST00000571805 NOTCH2NLQ7Z3S9 236 aa13.46□□□□□ -0.25
VPS53-211ENST00000571805 DNHD1Q96M86 4753 aa13.45□□□□□ -0.26
VPS53-211ENST00000571805 ALMS1Q8TCU4 4167 aa13.44□□□□□ -0.26
VPS53-211ENST00000571805 IGLV7-46A0A075B6I9 117 aa13.44□□□□□ -0.26
VPS53-211ENST00000571805 MRPL34Q9BQ48 92 aaKnown RBP13.44□□□□□ -0.26
VPS53-211ENST00000571805 DNAH6Q9C0G6 4158 aa13.43□□□□□ -0.26
VPS53-211ENST00000571805 DNAH5Q8TE73 4624 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms