RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 LINC00322Q6ZN03 302 aaPredicted RBP1□□□□□ -2.25
VRK1-202ENST00000553683 WFDC9Q8NEX5 89 aa1□□□□□ -2.25
VRK1-202ENST00000553683 COX7B2Q8TF08 81 aa1□□□□□ -2.25
VRK1-202ENST00000553683 TMEM14CQ9P0S9 112 aa1□□□□□ -2.25
VRK1-202ENST00000553683 APC2O95996 2303 aa1□□□□□ -2.25
VRK1-202ENST00000553683 NUMA1Q14980 2115 aa1□□□□□ -2.25
VRK1-202ENST00000553683 DUOX1Q9NRD9 1551 aa1□□□□□ -2.25
VRK1-202ENST00000553683 AFDNP55196 1824 aaKnown RBP0.99□□□□□ -2.25
VRK1-202ENST00000553683 DOT1LQ8TEK3 1739 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 TRBV6-1A0A0K0K1D8 114 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 LOC730098B7Z3J9 87 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 M0R1W7 72 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 NDUFB1O75438 58 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 ERHP84090 104 aaKnown RBP0.99□□□□□ -2.25
VRK1-202ENST00000553683 FXYD3Q14802 87 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 ZNF625Q96I27 306 aaPredicted RBP0.99□□□□□ -2.25
VRK1-202ENST00000553683 LINC00208Q96KT6 92 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 UBL5Q9BZL1 73 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 LINC00472Q9H8W2 130 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 PRO2289Q9P1D8 64 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 TRPM6Q9BX84 2022 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 KIAA1549Q9HCM3 1950 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 ZNF469Q96JG9 3925 aaPredicted RBP0.99□□□□□ -2.25
VRK1-202ENST00000553683 NEBP20929 6669 aa0.99□□□□□ -2.25
VRK1-202ENST00000553683 DIDO1Q9BTC0 2240 aaKnown RBP0.99□□□□□ -2.25
VRK1-202ENST00000553683 INTS1Q8N201 2190 aaKnown RBP0.98□□□□□ -2.25
VRK1-202ENST00000553683 FREM3P0C091 2139 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 MACF1Q9UPN3 7388 aaKnown RBP0.98□□□□□ -2.25
VRK1-202ENST00000553683 HEATR5BQ9P2D3 2071 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 TRRAPQ9Y4A5 3859 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 LCTP09848 1927 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 TRGV4A0A0C4DH28 118 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 UQCR11O14957 56 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 IGLV3-1P01715 115 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 PDE6GP18545 87 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 PATE1Q8WXA2 126 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 PLXNA2O75051 1894 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 HECTD4Q9Y4D8 3996 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 KIAA1549LQ6ZVL6 1849 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 PI4KAP42356 2102 aa0.98□□□□□ -2.25
VRK1-202ENST00000553683 EML5Q05BV3 1969 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 NYNRINQ9P2P1 1898 aaKnown RBP0.97□□□□□ -2.25
VRK1-202ENST00000553683 MYO7BQ6PIF6 2116 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 SIP14410 1827 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 NINQ8N4C6 2090 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 NBDYA0A0U1RRE5 68 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 H0Y9P7 68 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 NDUFA3O95167 84 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 RNASE3P12724 160 aaKnown RBP0.97□□□□□ -2.25
VRK1-202ENST00000553683 C10orf113Q5VZT2 155 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 RPS27LQ71UM5 84 aaKnown RBP0.97□□□□□ -2.25
VRK1-202ENST00000553683 PSORS1C2Q9UIG4 136 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 KLK9Q9UKQ9 250 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 R4GMQ9 66 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 NRXN2Q9P2S2 1712 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 PTPRSQ13332 1948 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 HEATR1Q9H583 2144 aaKnown RBP0.97□□□□□ -2.25
VRK1-202ENST00000553683 STAB2Q8WWQ8 2551 aa0.97□□□□□ -2.25
VRK1-202ENST00000553683 DOCK10Q96BY6 2186 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 SYNE2Q8WXH0 6885 aaKnown RBP0.96□□□□□ -2.26
VRK1-202ENST00000553683 ANKRD36A6QL64 1941 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 SRRM2Q9UQ35 2752 aaKnown RBP0.96□□□□□ -2.26
VRK1-202ENST00000553683 LOC110117498A0A087WWA1 95 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 JMJD7-PLA2G4BH0Y9G9 81 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 MGPP08493 103 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 TPRXLQ17RH7 258 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 DEFB114Q30KQ6 69 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 Q96NJ1 140 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 WFDC10AQ9H1F0 79 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 TMEM167BQ9NRX6 74 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 TIMM8BQ9Y5J9 83 aaPredicted RBP0.96□□□□□ -2.26
VRK1-202ENST00000553683 DOCK11Q5JSL3 2073 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 MALRD1Q5VYJ5 2156 aa0.96□□□□□ -2.26
VRK1-202ENST00000553683 BAZ2BQ9UIF8 2168 aaKnown RBP0.96□□□□□ -2.26
VRK1-202ENST00000553683 CNTRLQ7Z7A1 2325 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 TET1Q8NFU7 2136 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 SDK1Q7Z5N4 2213 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 NDUFA4O00483 81 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 COA5Q86WW8 74 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 DEFB124Q8NES8 71 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 GAFA1Q96PS6 74 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 KCNQ1DNQ9H478 68 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 PCDH15Q96QU1 1955 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 ZGRF1Q86YA3 2104 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 MPDZO75970 2070 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 MYOFQ9NZM1 2061 aa0.95□□□□□ -2.26
VRK1-202ENST00000553683 SACSQ9NZJ4 4579 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 CMYA5Q8N3K9 4069 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 PKDREJQ9NTG1 2253 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 IGKV2-40A0A087WW87 121 aaPredicted RBP0.94□□□□□ -2.26
VRK1-202ENST00000553683 ETDCA0A1B0GVM5 59 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 TRBV6-4A0A1B0GX49 114 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 IGKV2-29A2NJV5 120 aaPredicted RBP0.94□□□□□ -2.26
VRK1-202ENST00000553683 H0YGX0 51 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 NCR3O14931 201 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 IGKV2D-40P01614 121 aaPredicted RBP0.94□□□□□ -2.26
VRK1-202ENST00000553683 TFF3Q07654 80 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 DEFB112Q30KQ8 113 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 Q6ZTI0 123 aa0.94□□□□□ -2.26
VRK1-202ENST00000553683 SPACA4Q8TDM5 124 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms