RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FAM236DA0A1B0GTK5 79 aa8.58□□□□□ -1.04
VPS29-204ENST00000548259 SYS1-DBNDD2H3BUS1 97 aa8.58□□□□□ -1.04
VPS29-204ENST00000548259 MT2AP02795 61 aa8.58□□□□□ -1.04
VPS29-204ENST00000548259 FAM236CP0DP71 79 aa8.58□□□□□ -1.04
VPS29-204ENST00000548259 IGFL1Q6UW32 110 aa8.57□□□□□ -1.04
VPS29-204ENST00000548259 Q6ZVH6 145 aa8.57□□□□□ -1.04
VPS29-204ENST00000548259 C20orf166-AS1Q96NR2 134 aa8.56□□□□□ -1.04
VPS29-204ENST00000548259 KRTAP10-10P60014 251 aa8.55□□□□□ -1.04
VPS29-204ENST00000548259 LCE2BO14633 110 aa8.54□□□□□ -1.04
VPS29-204ENST00000548259 OCIAD2Q56VL3 154 aa8.54□□□□□ -1.04
VPS29-204ENST00000548259 SMIM11BQ8TCY0 68 aa8.54□□□□□ -1.04
VPS29-204ENST00000548259 TTTY13Q9BZ97 58 aa8.54□□□□□ -1.04
VPS29-204ENST00000548259 SYNE2Q8WXH0 6885 aaKnown RBP8.53□□□□□ -1.04
VPS29-204ENST00000548259 LINC01545Q5VT33 79 aa8.53□□□□□ -1.04
VPS29-204ENST00000548259 SS18L2Q9UHA2 77 aa8.53□□□□□ -1.04
VPS29-204ENST00000548259 A8MUU9 505 aa8.52□□□□□ -1.05
VPS29-204ENST00000548259 PET117Q6UWS5 81 aa8.52□□□□□ -1.05
VPS29-204ENST00000548259 hADV29S1A0JD25 119 aa8.51□□□□□ -1.05
VPS29-204ENST00000548259 Q6ZQY7 126 aa8.51□□□□□ -1.05
VPS29-204ENST00000548259 SCGB1D1O95968 90 aa8.5□□□□□ -1.05
VPS29-204ENST00000548259 MT1FP04733 61 aa8.5□□□□□ -1.05
VPS29-204ENST00000548259 LINC00575Q6W349 94 aa8.5□□□□□ -1.05
VPS29-204ENST00000548259 MUSTN1Q8IVN3 82 aa8.5□□□□□ -1.05
VPS29-204ENST00000548259 RBM12B-AS1Q9P1G2 102 aa8.5□□□□□ -1.05
VPS29-204ENST00000548259 KRTAP9-3Q9BYQ3 159 aa8.49□□□□□ -1.05
VPS29-204ENST00000548259 SNHG12Q9BXW3 62 aa8.48□□□□□ -1.05
VPS29-204ENST00000548259 PPDPFLQ8WWR9 84 aa8.47□□□□□ -1.05
VPS29-204ENST00000548259 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.44□□□□□ -1.06
VPS29-204ENST00000548259 H3BUT2 72 aa8.39□□□□□ -1.07
VPS29-204ENST00000548259 C3orf79P0CE67 100 aa8.38□□□□□ -1.07
VPS29-204ENST00000548259 KRTAP19-6Q3LI70 58 aa8.38□□□□□ -1.07
VPS29-204ENST00000548259 ANKRD39Q53RE8 183 aa8.38□□□□□ -1.07
VPS29-204ENST00000548259 TEN1Q86WV5 123 aa8.38□□□□□ -1.07
VPS29-204ENST00000548259 MTURNQ8N3F0 131 aa8.38□□□□□ -1.07
VPS29-204ENST00000548259 DSCR10P59022 87 aa8.37□□□□□ -1.07
VPS29-204ENST00000548259 KRTDAPP60985 99 aa8.37□□□□□ -1.07
VPS29-204ENST00000548259 COLCA2A8K830 154 aa8.36□□□□□ -1.07
VPS29-204ENST00000548259 BVES-AS1Q5T3Y7 98 aa8.36□□□□□ -1.07
VPS29-204ENST00000548259 C12orf57Q99622 126 aa8.36□□□□□ -1.07
VPS29-204ENST00000548259 SNCGO76070 127 aa8.34□□□□□ -1.07
VPS29-204ENST00000548259 LINC00313P59037 77 aa8.34□□□□□ -1.07
VPS29-204ENST00000548259 MPLKIPQ8TAP9 179 aa8.34□□□□□ -1.07
VPS29-204ENST00000548259 SIGMAR1Q99720 223 aa8.34□□□□□ -1.07
VPS29-204ENST00000548259 A0A087WSZ3 146 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BKO60814 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BJP06899 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BOP23527 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BBP33778 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BDP58876 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BCP62807 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST2H2BEQ16778 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BHQ93079 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BNQ99877 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HIST1H2BMQ99879 126 aa8.33□□□□□ -1.08
VPS29-204ENST00000548259 HRES1P13985 223 aa8.32□□□□□ -1.08
VPS29-204ENST00000548259 KRTAP6-3Q3LI67 103 aa8.32□□□□□ -1.08
VPS29-204ENST00000548259 KRTAP16-1A8MUX0 517 aa8.29□□□□□ -1.08
VPS29-204ENST00000548259 SNRPEP62304 92 aaKnown RBP8.29□□□□□ -1.08
VPS29-204ENST00000548259 ATOH7Q8N100 152 aa8.29□□□□□ -1.08
VPS29-204ENST00000548259 GHRHP01286 108 aa8.26□□□□□ -1.09
VPS29-204ENST00000548259 NDUFV3P56181 108 aaKnown RBP8.26□□□□□ -1.09
VPS29-204ENST00000548259 NOTCH2NLQ7Z3S9 236 aa8.25□□□□□ -1.09
VPS29-204ENST00000548259 LOC100996750A0A140TA64 210 aa8.24□□□□□ -1.09
VPS29-204ENST00000548259 KRTAP4-6Q9BYQ5 205 aa8.24□□□□□ -1.09
VPS29-204ENST00000548259 A8MWP4 228 aa8.23□□□□□ -1.09
VPS29-204ENST00000548259 IGKV4-1P06312 121 aa8.23□□□□□ -1.09
VPS29-204ENST00000548259 H3BMG7 143 aa8.22□□□□□ -1.09
VPS29-204ENST00000548259 HSBP1L1C9JCN9 74 aa8.19□□□□□ -1.1
VPS29-204ENST00000548259 H0YGX0 51 aa8.18□□□□□ -1.1
VPS29-204ENST00000548259 COA6Q5JTJ3 125 aaKnown RBP8.18□□□□□ -1.1
VPS29-204ENST00000548259 FABP2P12104 132 aa8.16□□□□□ -1.1
VPS29-204ENST00000548259 HIST1H4GQ99525 98 aa8.15□□□□□ -1.1
VPS29-204ENST00000548259 IGHV6-1A0A0B4J1U7 121 aa8.14□□□□□ -1.11
VPS29-204ENST00000548259 TRBV7-4A0A0J9YYF1 115 aa8.13□□□□□ -1.11
VPS29-204ENST00000548259 A0A1W2PNM2 257 aa8.12□□□□□ -1.11
VPS29-204ENST00000548259 Q8N9P0 234 aaPredicted RBP8.12□□□□□ -1.11
VPS29-204ENST00000548259 SPINK7P58062 85 aa8.11□□□□□ -1.11
VPS29-204ENST00000548259 RAB37Q96AX2 223 aa8.11□□□□□ -1.11
VPS29-204ENST00000548259 C8orf87E5RJ46 101 aa8.1□□□□□ -1.11
VPS29-204ENST00000548259 ANKRD29Q8N6D5 301 aa8.1□□□□□ -1.11
VPS29-204ENST00000548259 A0A1B0GX51 115 aa8.09□□□□□ -1.11
VPS29-204ENST00000548259 ZCCHC13Q8WW36 166 aaKnown RBP8.09□□□□□ -1.11
VPS29-204ENST00000548259 DEFB116Q30KQ4 102 aa8.08□□□□□ -1.12
VPS29-204ENST00000548259 NEBP20929 6669 aa8.06□□□□□ -1.12
VPS29-204ENST00000548259 FAM218AQ96MZ4 157 aa8.06□□□□□ -1.12
VPS29-204ENST00000548259 LINC00472Q9H8W2 130 aa8.06□□□□□ -1.12
VPS29-204ENST00000548259 TRACP01848 142 aa8.04□□□□□ -1.12
VPS29-204ENST00000548259 H3BQ85 93 aa8.03□□□□□ -1.12
VPS29-204ENST00000548259 WFDC13Q8IUB5 93 aa8.03□□□□□ -1.12
VPS29-204ENST00000548259 A0A1B0GVX0 72 aa8.02□□□□□ -1.13
VPS29-204ENST00000548259 A0A0B4J2C4 111 aa8□□□□□ -1.13
VPS29-204ENST00000548259 DNAL4O96015 105 aa8□□□□□ -1.13
VPS29-204ENST00000548259 CCKP06307 115 aa8□□□□□ -1.13
VPS29-204ENST00000548259 LYRM7Q5U5X0 104 aa8□□□□□ -1.13
VPS29-204ENST00000548259 S100A2P29034 98 aa7.99□□□□□ -1.13
VPS29-204ENST00000548259 A0A1B0GV72 72 aa7.98□□□□□ -1.13
VPS29-204ENST00000548259 ORMDL1Q9P0S3 153 aa7.97□□□□□ -1.13
VPS29-204ENST00000548259 KRTAP20-1Q3LI63 56 aa7.96□□□□□ -1.14
VPS29-204ENST00000548259 TMEM256-PLSCR3K7ERE1 68 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 223.3 ms